Hi,
There is no GUI option, but you can play about with fslswapdim on the
command line to do it (run from the Terminal application). Just make
sure you keep a backup of the original and do *not* keep any output
where fslswapdim has printed a message about left/right flips, as this
is quite dangerous.
If you have a standard axial scan (that looks like the standard brain in
orientation in fslview, except for being upside down in the sagittal and
coronal views) then the following command should work:
fslswapdim origdata -x y -z swappeddata
All the best,
Mark
On 15 Feb 2008, at 16:46, Emily Stoneham wrote:
> Hello!
>
> When I do an initial look at the functional images (289 to a
> run), the sagittals are all upside down.
> is there a way to fix all of them at once using the FSL GUI (I am
> on a Mac)?
>
> Thanks,
> Emily
>
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