Hi All,
I'm running run_first_all on my dataset in order to view bilateral amygdalae
and hippocampi and their overlap in the same file. I tried modifying the
original script (modified version attached) and it ran without error.
However, when I overlayed the ROIs on my grayscale file things didn't look
right. The overlap was not properly defined and there was no discernible
color difference when viewed in either fslview or itksnap.
Has anyone tried a similar approach and succeeded? or is another method more
effective? I'm thinking it might have to do with line 97:
case "${s:2:4}" in
Any ideas?
Thanks much,
Melissa
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