Hi,
First, try deleting the empty .msf files and rerunning tbss_2_reg. If
they still fail, then there is something wrong with these subjects.
Most likely there is something obviously wrong with the images (like
converted wrongly). Much less likely, IRTK may be unhappy with these
particular subjects for no obvious reason.
Cheers, Steve.
On 7 Feb 2008, at 22:02, Eytan Raz wrote:
> Dear FSLers,
>
> We are trying to use TBSS comparimg two patients.
> When we run the script tbss_2_reg we obtain as output two empty
> files called *.msf both applying flag -T or flag -t.
> Moreover:
> - we obtain this result in just 10 seconds and not in the 5hours x N
> subjects as written in the tutorial.
> - we obtain the same error by using example data
>
> --
> Dr Eytan Raz
> Rome - Italy
>
>
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Stephen M. Smith, Professor of Biomedical Engineering
Associate Director, Oxford University FMRIB Centre
FMRIB, JR Hospital, Headington, Oxford OX3 9DU, UK
+44 (0) 1865 222726 (fax 222717)
[log in to unmask] http://www.fmrib.ox.ac.uk/~steve
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