Hi,
I think I would recommend doing eddy correction first and b0
correction as part of the registration pipeline. There isn't a clear
'right' answer to this, but this is probably best/simplest.
Cheers, Steve.
On 7 Feb 2008, at 17:55, Marenco, Stefano (NIH/NIMH) [E] wrote:
> Which order of operations should we use for eddy/motion correction
> and b0 distortion correction?
>
> I thought we could use feat, and change the MCFLIRT options to take
> a 12 dof affine registration to the first volume in the series, but
> I see that I cannot modify the parameters for mcflirt. Any
> suggestions?
>
> Stefano Marenco
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Stephen M. Smith, Professor of Biomedical Engineering
Associate Director, Oxford University FMRIB Centre
FMRIB, JR Hospital, Headington, Oxford OX3 9DU, UK
+44 (0) 1865 222726 (fax 222717)
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