You should also play with the -r setting (radius of the brain in mm) and the
-f setting.
Peace,
Matt.
-----Original Message-----
From: FSL - FMRIB's Software Library [mailto:[log in to unmask]] On Behalf
Of Kivikangas Markus
Sent: Thursday, February 21, 2008 8:15 AM
To: [log in to unmask]
Subject: Re: [FSL] 'Manual BET'
Thanks, it helped a lot with T1 images!!
But for some reason it doesn't seem to have effect on T2 images. Why is that
and how could I improve T2 images?
-----Original Message-----
From: FSL - FMRIB's Software Library on behalf of Diana Tordesillas
Gutiérrez
Sent: Thu 21.2.2008 15:11
To: [log in to unmask]
Subject: Re: [FSL] 'Manual BET'
Hi,
Have you tried to give the centre of gravity coordinates? -c <x y z>
option in command line. It improves loads bet performance.
Diana
Markus Kivikangas dijo:
> Hi,
>
> I'd like to know if it is possible to manually remove parts of skull after
> using BET? I ask this because BET may do excellent work in the most part
> of
> the brain but may leave huge amounts of skull and other unwanted stuff for
> other parts (see the attachment).
>
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