> Thanks for help.
> looking at your skeleton - could you please send the
> snapshot to the whole list next time? - ,
I'm afraid the message become two big (> 50 kb).
> I suspect
> that the affine registration between your best target
> (you ran tbss_2_reg with the -n option, not -S)
You are right. Sorry for the confusion.
> and
> the MNI152 space has failed. Which version of FSL are
> you using?
I'm using FSL 4.0
T
> That used to be a recurrent problem but has
> been fixed now by using flirt registration.
> In any case, you might want to replace the
> MNI152_T1_1mm image in the tbss_3_postreg processing
> by the FMRIB58_FA_1mm, that should solve the problem.
> Please let me know if it does not.
Do you mean to use tbss_3_postreg -T?
Or continue to use tbss_3_postreg -S, but somehow swap the
MNI152_T1_1mm with the FMRIB58_FA_1mm?
Thanks
>
>
> Hope this helps,
> Gwenaelle
>
>
> --- Jiansong Xu <[log in to unmask]> a écrit :
>
>> Dear Friend:
>>
>> I followed the procedures of TBSS website to
>> register my FA images
>> into MNI152 space. I used tbss_2_reg -S and
>> tbss_3_postreg -S. When I
>> view the mean images with: fslview MNI152
>> mean_FA_skeleton, I found
>> the skeleton is larger than the standard space. Look
>> like use the
>> skull of the template as the out edge of the brain?
>> Any suggestions
>> are appreciated.
>>
>> Best
>>
>> Jiansong Xu, M.D., Ph.D.
>> Associate Research Scientist
>> Dept. of Psychiatry
>> Yale School of Medicine
>>
>> Connecticut Mental Health Center, Room S-100
>> 34 Park St.
>> New Haven, CT 06519
>>
>
>
>
>
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