Sorry, I haven't use bet on T2 images, but I guess that if you have both
in the same space (f.i. flirt T2_to_T1) and make a brain_mask when
"betting" T1, you may use that mask to extract the brain from skulp in
your T2 image.
Diana
Kivikangas Markus dijo:
> Thanks, it helped a lot with T1 images!!
>
> But for some reason it doesn't seem to have effect on T2 images. Why is
> that and how could I improve T2 images?
>
>
>
>
> -----Original Message-----
> From: FSL - FMRIB's Software Library on behalf of Diana Tordesillas
> Gutiérrez
> Sent: Thu 21.2.2008 15:11
> To: [log in to unmask]
> Subject: Re: [FSL] 'Manual BET'
>
> Hi,
>
> Have you tried to give the centre of gravity coordinates? -c <x y z>
> option in command line. It improves loads bet performance.
>
> Diana
>
>
> Markus Kivikangas dijo:
>> Hi,
>>
>> I'd like to know if it is possible to manually remove parts of skull
>> after
>> using BET? I ask this because BET may do excellent work in the most part
>> of
>> the brain but may leave huge amounts of skull and other unwanted stuff
>> for
>> other parts (see the attachment).
>>
>
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