As it stands flirt won't automatically submit itself to a queue. You
will need to call fsl_sub with the flirt command as the command to run
on the queues. Only FEAT and BedpostX are cluster aware 'out of the
box'.
Duncan
On 8 Jan 2008, at 16:15, Lokke Highstein wrote:
> We have been having trouble getting FLIRT to submit to our cluster.
> The FLIRT jobs just seem to run on the head node, and don't go
> through fsl_sub.
>
> We've got most FSL functions to utilize our SGE, but FLIRT has never
> seemed to work. This normally wouldn't be a problem, but we have 20
> subjects with several runs each, so we would like to script it and
> send to our server. Is there any reason why the FLIRT command
> wouldn't use the SGE through fsl_sub?
>
> Thanks for the help,
>
> Lokke Highstein
> Systems Manager
> fMRI Research Center, Columbia University
>
--
Duncan A B Mortimer DPhil MChem
Computing Officer, FMRIB Centre, University of Oxford,
John Radcliffe Hospital, Headington, Oxford OX3 9DU, UK.
Tel: (0)1865 222713
WWW: http://www.fmrib.ox.ac.uk/~duncan email: [log in to unmask]
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