Hello:
I apologize for posting to CCPNMR list if this is ARIA's problem. Recently,
I encountered the error. Could somebody please give ideas what might be
wrong. My investigation on this issue was not successful.
The ARIA run crashes with this:
ARIA Version 2.2. Authors: Benjamin Bardiaux, Michael Habeck, Jens Linge,
Therese Malliavin, Sean O'Donoghue, Wolfgang Rieping, and Michael Nilges.
If you use this software, please quote the following reference(s):
Rieping W., Habeck M., Bardiaux B., Bernard A., Malliavin T.E.,
Nilges M.(2007) ARIA2: automated NOE assignment and data integration in NMR
structure calculation. Bioinformatics 23:381-382
Loading project "A2testcya.xml"...
MESSAGE [Project]: Temporary directory has been set to /raid/Users/vitaliy/
Structure/CCPN/ARIA2/aria_temp.tmpEw5qIq1201621730
MESSAGE [Project]: Checking host list ...
MESSAGE [Job manager]: Command "ssh lilac nice csh" ... ok.
MESSAGE [Job manager]: Command "csh" ... ok.
MESSAGE [Project]: Cache is disabled.
MESSAGE [Project]: Reading spectrum /raid/Users/vitaliy/Structure/CCPN/
ARIA2/runArocya/data/spectra/.
MESSAGE [Project]: Reading chemical shift list /raid/Users/vitaliy/
Structure/CCPN/ARIA2/runArocya/data/spectra/.
Traceback (most recent call last):
File "/usr/local/aria2.2/src/py/AriaXML.py", line 232, in __load
doc = XMLPickler.load(self, filename, gzip)
File "/usr/local/aria2.2/src/py/xmlutils.py", line 334, in load
f = open_func(filename)
IOError: [Errno 21] Is a directory
Traceback (most recent call last):
File "/usr/local/aria2.2/aria2.py", line 865, in ?
verbose_level, use_condor=condor)
File "/usr/local/aria2.2/aria2.py", line 782, in run_aria
project.load_and_preprocess_data()
File "/usr/local/aria2.2/src/py/Project.py", line 1278, in
load_and_preprocess_data
self.read_data()
File "/usr/local/aria2.2/src/py/Project.py", line 1021, in read_data
self.read_spectra(cache)
File "/usr/local/aria2.2/src/py/Project.py", line 584, in read_spectra
assignment = pickler.load(shifts)
File "/usr/local/aria2.2/src/py/AriaXML.py", line 252, in load
return self.__load(filename, gzip)
File "/usr/local/aria2.2/src/py/AriaXML.py", line 244, in __load
self.error(Exception, '%s: %s' % (filename, msg))
File "/usr/local/aria2.2/src/py/aria.py", line 206, in error
raise exception, msg
Exception: USER ERROR <AriaXML.AriaXMLPickler> File
"/usr/local/aria2.2/src/py/AriaXML.py", line 252 in load
/raid/Users/vitaliy/Structure/CCPN/ARIA2/runArocya/data/spectra/: [Errno 21]
Is a directory
Thank you,
Vitaliy
|