If you take new dictionary with new refmac it may solve this and some
other naming problems.
Try from the website:
www.ysbl.york.ac.uk/YSBLPrograms/index.jsp
Garib
On 3 Jan 2008, at 16:53, Daouda TRAORE wrote:
> Hi all,
> I'm trying to refine a protein DNA complex using Refmac.
> Unfortunately the job fails because of the definition of nucleosides :
> In the pdb file I use for molecular replacement (and it's the same
> for all protein-DNA complex I found in the PDB) nucleosides are
> labelled DG, DT, DA , DC. In the monomer libraries for Refmac these
> are labelled GD, TD, AD, CD.
> The jobs fails also if I replace the "DG, DT, DA , DC" by "GD, TD,
> AD, CD" in the coordinate file prior to refinement.
> Could someone help me.
>
> --
> --------------------------------------------------------
> Daouda A.K. TRAORE, PhD Student
>
> Laboratoire de Cristallographie et Cristallogenèse des Protéines
> Institut de Biologie Structurale de Grenoble
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> Fax: +33 4 38 78 51 22
>
> ************************
>
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> Fax : +33 4 38 78 34 62
>
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