This looks promising:
http://www.ccp4.ac.uk/newsletters/newsletter36/13_perl.html
Ezra Peisach wrote:
> You may wish to look at the occp4-pm perl package by E. Courcelle and
> J.P. Samama (formerly available from ftp://ftp.ipbs.fr/pub/occp4 - but
> this no longer works...) I no longer have a copy but someone might...
>
> Ezra
>
>
> [log in to unmask] wrote:
>> Dear CCP4 users,
>>
>> I am writing a PERL script to execute a number of CCP4 commands
>> (ncsmask,
>> pdbset, and dm) in succession. I have tried using system call or PIPE
>> command, neither of which work. The ccp4 scripts generated work
>> independently
>> on the command line.
>>
>>
>> Any suggestions?
>>
>> Thank you in advance!
>>
>
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