>
> Susanna, would you mind telling me how you use fslcreatehd to
> convert to analyze format? Currently we use AFNI's to3d to create
> NIfTII files and then use 3drefit to change them into the
> orientation FSL likes.
I should also have mentioned that following the processing step run
by the script I just posted, we then had to re-orientate the scans.
We did this with fslswpdim although I had to get help from the FSL
team to work out exactly which direction to change (all these emails
are in the archives as I struggled with a number of these steps).
Suzanna
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