Hi,
I have a error when I run bedposdtx.
My input directory: bvals
bvecs
data
nodif
nodif_brain(bet from a volume with no
diffusion weighting)
nodif_brain_mask(created from nodif_brain)
First, I do bedpostx_datacheck list:
data_type INT16
dim1 128
dim2 128
dim3 70
dim4 14
datatype 4
pixdim1 2.0299999714
pixdim2 2.0299999714
pixdim3 2.2000000477
pixdim4 1.0000000000
cal_max 0.0000
cal_min 0.0000
file_type NIFTI-1+
fdt_demo2/nodif_brain_mask
data_type INT16
dim1 128
dim2 128
dim3 70
dim4 1
datatype 4
pixdim1 2.0299999714
pixdim2 2.0299999714
pixdim3 2.2000000477
pixdim4 1.0000000000
cal_max 0.0000
cal_min 0.0000
file_type NIFTI-1+
num lines in fdt_demo2/bvals
1
num words in fdt_demo2/bvals
14
num lines in fdt_demo2/bvecs
3
num words in fdt_demo2/bvecs
42
Second, command line: bedpostx fdt_demo2 -n 2 -w 1 -b 1000
Then it went to
subjectdir is /usr/local/fsl/fdt_demo2
Making bedpostx directory structure
Queuing preprocessing stages
Queuing parallel processing stage
0 slices processed
/usr/local/fsl/bin/bedpostx: 197: Syntax error: Bad for loop variable
I got an error.
I have 2 question:
1.how do I solve the error?
2.something wrong at data?
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