Not enough information! Does the XYZIN file exist?
Eleanor
Raja Dey wrote:
> Hi All,
> I was trying to run NCS Phased refinement in the gui of CCP4 ( Refmac_5.2.0005) and getting the following error. I just pasted below the last part of the log file. Any help is greatly appreciated.
>
> Tarak
>
>
> ROTATION MATRIX
> -0.567 -0.405 0.717
> -0.385 -0.639 -0.665
> 0.728 -0.654 0.206
>
>
>
>
>
>
>
>
> PATTERSON SPHERICAL POLARS OMEGA PHI CHI OMEGA TO AXIS ZO PHI FROM AXIS XO TO AXIS YO
>
>
> WHEN BETA=0 CAN ONLY DEFINE ALPHA + GAMMA .
> WHEN BETA = 180 CAN ONLY DEFINE GAMMA - ALPHA.
>
>
> CROWTHER ALPHA BETA GAMMA 137.15697 -78.11038 41.90139
> SPHERICAL POLARS OMEGA PHI CHI 39.04911 -42.37222 179.26884
> DIRECTION COSINES OF ROTATION AXIS 0.46554 -0.42468 0.77661
>
>
> Angle between rotation axis and Centroid vector 87.88194
>
>
>
>
> ***** Note: Since this angle between rotation axis and Centroid vector is near to 90.0 this may represent a pure rotation ***
> LSQKAB: Normal Termination
> Times: User: 0.0s System: 0.0s Elapsed: 0:00
> </pre>
> </html>
>
>
>
>
> ------------- NCS Mask -------------------
> unable to open phase file
> ***************************************************************************
> * Information from CCP4Interface script
> ***************************************************************************
> The program run with command: ncsmask XYZIN /home/raja/liang/native/p6522/b-sharpen/b-sharpen_1_12_chainI_pdb.tmp MSKOUT /home/raja/liang/native/p6522/b-sharpen/b-sharpen_1_15_msk.tmp
> has failed with error message
> child process exited abnormally
> ***************************************************************************
>
>
>
>
> #CCP4I TERMINATION STATUS 0 "child process exited abnormally"
> #CCP4I TERMINATION TIME 07 Dec 2007 16:13:00
> #CCP4I MESSAGE Task failed
>
>
>
>
> Raja Dey, Ph.D.
> Research Associate
> Molecular and Computational Biology
> University of Southern California
> 1050 Childs Way, Los Angeles, CA 90089
>
>
> ---------------------------------
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