POSA at the Godzik lab does exactly what you are after, flexibly!
http://fatcat.burnham.org/POSA/
>> Hi all=A3=AC
>>
>> I want to produce structure-based multiple sequence alignment of my =20=
>
>> protein with five of its homologs on DALI server. However, when I =20
>> tried the "Database Search Form", only one homolog was picked up =20
>> from PDB. If I align my protein with each homolog by the "DaliLite =20
>> Pairwise comparison", how can I combine them together?
>>
>> Thanks in advance.
>>
>>
>> Best regards,
>> =09
>> Sincerely,
>>
>> Dalei Wu
>> Drug Discovery and Design Center
>> Shanghai Institute of Materia Medica
>> Shanghai Institutes for Biological Sciences
>> Chinese Academy of Sciences
>> 555 Zu Chongzhi Road, Shanghai, 201203, China
>> [log in to unmask]
>> 2007-12-05
>
|