HI - it sounds like if the registrations were bad, and there are no
output files in the stats subdirectory, then either your input data is
somehow problematic (e.g. illegal NIFTI files), or that your computer
isn't happy with the particular binaries that you have installed
(though I think the latter is unlikely as the error messages would be
worse). Exactly which version of FSL are you running? Can you send the
output of fslerrorreport and also try running again from scratch to
see what happens then - if the same thing happens you might like to
upload the whole FEAT output directory as well as all the input data
and we can have a quick look:
Please upload the files in a single compressed tarfile to
http://www.fmrib.ox.ac.uk/cgi-bin/upload.cgi
And then email me the upload ID.
Cheers.
On 6 Dec 2007, at 22:26, Daniel Schwartz wrote:
> Hi, I'm an FEAT rookie, and this is the first time I've posted to the
> list, so if I'm doing something wrong (i.r.t. the fax/phone analogy in
> the welcome email) I hope it's possible to let me know.
>
> I've run FEAT and have recieved a few error messages, and then it
> looks
> like it quits (after almost 2 hours... ouch). I've attached an edited
> text file version of report_log. (the html attachment didn't make it
> through LISTSERV). The offending errors start at the seventh command
> from the bottom (In "Stats"):
>
> /home/daniel/fsl40/bin/flirt -ref standard -in
> example_func_orig_distorted -out example_func_orig_distorted2standard
> -applyxfm -init example_func_orig_distorted2standard.mat -interp
> trilinear
> Could not open matrix file example_func_orig_distorted2standard.mat
>
> I can't find any stats images in .feat/stats, and my "report_stats"
> page
> only includes my design and efficiency matrices (Although I don't know
> whether it should include maps or not, since I've never run it all the
> way through). I've scripted the whole FEAT run by using "sed" to find
> and replace subject names and run names in the .fsf. I'm using Fedora
> Core 6 (Linux) on an Intel Dual Quadcore w/ 4GB.
>
> Any help is greatly appreciated!! Thanks...
> -Daniel
>
>
>
> Daniel Schwartz, CIC
> Functional Brain Imaging Lab
> Oregon Health & Sciences University
> 3181 SW Sam Jackson Pk. Rd.
> Portland, OR 97239
> (503) 494-6494
> <report_log_edited_for_length>
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Stephen M. Smith, Professor of Biomedical Engineering
Associate Director, Oxford University FMRIB Centre
FMRIB, JR Hospital, Headington, Oxford OX3 9DU, UK
+44 (0) 1865 222726 (fax 222717)
[log in to unmask] http://www.fmrib.ox.ac.uk/~steve
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