Hi,
You could edit the bet script in $FSLDIR/bin to remove the files (at
the end of the -A function) that you don't want - that would be pretty
straightforward.
Cheers.
On 29 Oct 2007, at 12:37, Ed Gronenschild wrote:
> Hi,
>
> I would like to congratulate the FSL team with the new version of BET
> as part of FSL 4.0.1 release. I applied it to a T1 1.5 Tesla stack and
> got excellent results (OSX 10.4.10).
>
> A question about the generated output: I executed the command
> "BET stack_300 stack_300_sks -A"
> and got a whole bunch of files:
>
> stack_300_sks_inskull_mask.img
> stack_300_sks_inskull_mesh.img
> stack_300_sks_inskull_mesh.off
> stack_300_sks_mesh.vtk
>
> stack_300_sks_outskin_mask.img
> stack_300_sks_outskin_mesh.img
> stack_300_sks_ioutskin_mesh.off
>
> stack_300_sks_outskull_mask.img
> stack_300_sks_outskull_mesh.img
> stack_300_sks_outskull_mesh.off
>
> stack_300_sks_skull_mask.img
>
> stack_300_sks.img
>
> of which I only would like to have:
>
> stack_300_sks_outskull_mask.img
> and
> stack_300_sks.img
>
> Which options should I use to suppress the generation of the
> other files.
>
> Ed
---------------------------------------------------------------------------
Stephen M. Smith, Professor of Biomedical Engineering
Associate Director, Oxford University FMRIB Centre
FMRIB, JR Hospital, Headington, Oxford OX3 9DU, UK
+44 (0) 1865 222726 (fax 222717)
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