Hi - this should work, but the question really is do you need to do
this?
For a standard FMRI analysis in FEAT, you don't need to transform all
of the 4D data into standard space. FEAT will do similar (to what you
described) registrations for you but doesn't apply them to get to
standard space until you actually run the group-level analysis. I
suggest having a detailed look at the FEAT manual for more on this.
Cheers.
On 2 Nov 2007, at 18:26, Becker, Theresa Marie (UMC-Student) wrote:
> Hi. I'm relatively new to working with FSL. I would like to cross-
> register (co-register) one person's functional data to a reference
> brain, and I am looking for the best way to do this. Currently, I
> am using the "Low res image --> High res image --> Reference image"
> Mode in FLIRT to do this. I put our standard brain into the
> "Reference image" window, the participant's T1-weighted structural
> image into the "High res image" window, and the participant's 4D
> functional image (i.e., a file with all of the participant's
> functional data) into the "Low res image" window. Should this
> work? Is this the best way to do this cross registration (co-
> registration) using FSL? Is there anything I should be aware of or
> better method you could tell me about? Thanks for your attention to
> this question.
>
> Best,
> Theresa
>
>
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Stephen M. Smith, Professor of Biomedical Engineering
Associate Director, Oxford University FMRIB Centre
FMRIB, JR Hospital, Headington, Oxford OX3 9DU, UK
+44 (0) 1865 222726 (fax 222717)
[log in to unmask] http://www.fmrib.ox.ac.uk/~steve
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