Hello,
I keep getting the following error message when I try and run a stats and
poststats FEAT. Can you please help me figure what it means and what I can
do to fix the problem? I have previously run FEATS using the same brains
successfully.
Thanks for your help!
Prestats
Total original volumes = 729
/Users/rebeccachandler/fsl/bin/fslroi
/Volumes/G-DRIVE/MR_cxr/subject1/1st_level_cxr_NoUnwarp.feat/denoised_data
example_func 364 1
/Users/rebeccachandler/fsl/bin/fslmaths
/Volumes/G-DRIVE/MR_cxr/subject1/1st_level_cxr_NoUnwarp.feat/denoised_data
filtered_func_data
/Users/rebeccachandler/fsl/bin/fslmaths filtered_func_data -Tmin -bin mask
-odt char
/Users/rebeccachandler/fsl/bin/fslstats filtered_func_data -k mask -R | awk
'{ print }' -
fslstats(2686) malloc: *** vm_allocate(size=737280) failed (error code=3)
fslstats(2686) malloc: *** error: can't allocate region
fslstats(2686) malloc: *** set a breakpoint in szone_error to debug
terminate called after throwing an instance of 'std::bad_alloc'
what(): St9bad_alloc
/Users/rebeccachandler/fsl/bin/fslmaths filtered_func_data -Tmean mean_func
/bin/rm -rf prefiltered_func_data*
Stats
mkdir -p custom_timing_files ; /bin/cp
/Volumes/G-DRIVE/MR_cxr/EV/cxr_ev/subject1_cxr/subject1_t1.ev
custom_timing_files/ev1.txt
mkdir -p custom_timing_files ; /bin/cp
/Volumes/G-DRIVE/MR_cxr/EV/cxr_ev/subject1_cxr/subject1_t2.ev
custom_timing_files/ev2.txt
mkdir -p custom_timing_files ; /bin/cp
/Volumes/G-DRIVE/MR_cxr/EV/cxr_ev/subject1_cxr/subject1_t3.ev
custom_timing_files/ev3.txt
mkdir -p custom_timing_files ; /bin/cp
/Volumes/G-DRIVE/MR_cxr/EV/cxr_ev/subject1_cxr/subject1_t4.ev
custom_timing_files/ev4.txt
mkdir -p custom_timing_files ; /bin/cp
/Volumes/G-DRIVE/MR_cxr/EV/cxr_ev/subject1_cxr/subject1_t5.ev
custom_timing_files/ev5.txt
mkdir -p custom_timing_files ; /bin/cp
/Volumes/G-DRIVE/MR_cxr/EV/cxr_ev/subject1_cxr/subject1_t6.ev
custom_timing_files/ev6.txt
mkdir -p custom_timing_files ; /bin/cp
/Volumes/G-DRIVE/MR_cxr/EV/cxr_ev/subject1_cxr/subject1_t7.ev
custom_timing_files/ev7.txt
mkdir -p custom_timing_files ; /bin/cp
/Volumes/G-DRIVE/MR_cxr/EV/cxr_ev/subject1_cxr/subject1_t8.ev
custom_timing_files/ev8.txt
mkdir -p custom_timing_files ; /bin/cp
/Volumes/G-DRIVE/MR_cxr/EV/cxr_ev/subject1_cxr/subject1_t9.ev
custom_timing_files/ev9.txt
mkdir -p custom_timing_files ; /bin/cp
/Volumes/G-DRIVE/MR_cxr/EV/cxr_ev/subject1_cxr/subject1_t10.ev
custom_timing_files/ev10.txt
mkdir -p custom_timing_files ; /bin/cp
/Volumes/G-DRIVE/MR_cxr/EV/cxr_ev/subject1_cxr/subject1_wins.ev
custom_timing_files/ev11.txt
mkdir -p custom_timing_files ; /bin/cp
/Volumes/G-DRIVE/MR_cxr/EV/cxr_ev/subject1_cxr/subject1_losses.ev
custom_timing_files/ev12.txt
/Users/rebeccachandler/fsl/bin/film_gls -rn stats -sa -ms 5 -sp
/Users/rebeccachandler/fsl/bin/susan_smooth filtered_func_data design.mat
what(): St9bad_alloc
sh: -c: line 1: syntax error near unexpected token `('
sh: -c: line 1: `/Users/rebeccachandler/fsl/bin/film_gls -rn stats -sa -ms 5
-sp /Users/rebeccachandler/fsl/bin/susan_smooth filtered_func_data
design.mat what(): St9bad_alloc'
Error: FILM did not complete - it probably ran out of memory
Post-stats
/Users/rebeccachandler/fsl/bin/contrast_mgr stats design.con
** ERROR (nifti_image_read): failed to find header file for
'stats/sigmasquareds'
** ERROR: nifti_image_open(stats/sigmasquareds): bad header info
Error: failed to open file stats/sigmasquareds
Error:: FslGetDim: Null pointer passed for FSLIO
couldn't change working directory to
"/Volumes/G-DRIVE/MR_cxr/subject1/2nd_level_cxr_NoUnwarp.feat/stats": no
such file or directory
while executing
"cd ${FD}/stats"
(procedure "feat5:proc_poststats" line 50)
invoked from within
"feat5:proc_poststats $RERUNNING $STDSPACE "
("-poststats" arm line 6)
invoked from within
"switch -- [ lindex $argv $argindex ] {
-I {
incr argindex 1
set session [ lindex $argv $argindex ]
}
-D {
incr argindex 1
set..."
("for" body line 2)
invoked from within
"for { set argindex 1 } { $argindex < $argc } { incr argindex 1 } {
switch -- [ lindex $argv $argindex ] {
-I {
incr argindex 1
set ses..."
(file "/Users/rebeccachandler/fsl/bin/feat" line 137)
couldn't change working directory to
"/Volumes/G-DRIVE/MR_cxr/subject1/2nd_level_cxr_NoUnwarp.feat/stats": no
such file or directory
while executing
"cd ${FD}/stats"
(procedure "feat5:proc_poststats" line 50)
invoked from within
"feat5:proc_poststats $RERUNNING $STDSPACE "
("-poststats" arm line 6)
invoked from within
"switch -- [ lindex $argv $argindex ] {
-I {
incr argindex 1
set session [ lindex $argv $argindex ]
}
-D {
incr argindex 1
set..."
("for" body line 2)
invoked from within
"for { set argindex 1 } { $argindex < $argc } { incr argindex 1 } {
switch -- [ lindex $argv $argindex ] {
-I {
incr argindex 1
set ses..."
(file "/Users/rebeccachandler/fsl/bin/feat" line 137)
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