hi, thanks for the help.
we ran this job just like every other job, in that ted logged in via
ssh to the head node and ran the job via command line. running
bedpost jobs works just fine this way, so we are curious what we have
to do differently for this type of job.
thanks again, we're really excited about the type of work we are able
to do with the new version of fsl.
-lokke
On Nov 17, 2007, at 4:29 AM, Steve Smith wrote:
> This sounds like you're running tbss_2_reg simultaneously on more
> than one machine? To run this with SGE, you should run it just
> once, on an SGE submission machine, and it will do the SGE
> submissions of the sub-jobs for you.
>
> Cheers.
>
>
> On 16 Nov 2007, at 21:54, Ted Yanagihara wrote:
>
>> Hi list,
>>
>> I am trying to run TBSS on our cluster and tried to set up the
>> SGE_ROOT as described on the FSL website, but found no reference
>> to SGE_ROOT in tbss_2_reg although we do see that fsl_sub is
>> called at the end of tbss_2_reg. The cluster has been working for
>> all our other jobs (thanks to the list's help), but here is the
>> error we get after running "tbss_2_reg -T"
>>
>> wc: .commands: open: No such file or directory
>> qsub: command required for a binary job
>>
>>
>> Thanks in advance!
>>
>> ted
>>
>
>
> ----------------------------------------------------------------------
> -----
> Stephen M. Smith, Professor of Biomedical Engineering
> Associate Director, Oxford University FMRIB Centre
>
> FMRIB, JR Hospital, Headington, Oxford OX3 9DU, UK
> +44 (0) 1865 222726 (fax 222717)
> [log in to unmask] http://www.fmrib.ox.ac.uk/~steve
> ----------------------------------------------------------------------
> -----
|