Hi,
I have just tried to upgrade analysis on my laptop and it failed. I have
attached the trace back
Error, the DataAnalysisBasic module will not work, something is wrong with
the C code.
Traceback (most recent call last):
File "/data/prog/ccpnmr/ccpnmr1.0/python/ccpnmr/analysis/AnalysisGui.py",
line 72, in ?
from ccpnmr.analysis.AnalysisPopup import AnalysisPopup
File
"/data/prog/ccpnmr/ccpnmr1.0/python/ccpnmr/analysis/AnalysisPopup.py", li
ne 103, in ?
from ccpnmr.analysis.CalcHeteroNoePopup import CalcHeteroNoePopup
File
"/data/prog/ccpnmr/ccpnmr1.0/python/ccpnmr/analysis/CalcHeteroNoePopup.py
", line 69, in ?
from ccpnmr.analysis.DataAnalysisBasic import matchHnoePeaks
File
"/data/prog/ccpnmr/ccpnmr1.0/python/ccpnmr/analysis/DataAnalysisBasic.py"
, line 63, in ?
from memops.c.FitMethod import runFit
ImportError: cannot import name runFit
and the installation output;
>>> installing /data/prog/ccpnmr/ccpnmr1.0/python/memops/gui/ScrolledGraph.py
installing /data/prog/ccpnmr/ccpnmr1.0/python/ccpnmr/update/UpdateAgent.py
installing /data/prog/ccpnmr/ccpnmr1.0/python/ccpnmr/analysis/WindowDraw.py
installing /data/prog/ccpnmr/ccpnmr1.0/python/ccpnmr/analysis/CalcRatesPopup.py
installing /data/prog/ccpnmr/ccpnmr1.0/python/ccpnmr/analysis/FollowShiftChanges
Popup.py
installing /data/prog/ccpnmr/ccpnmr1.0/python/ccpnmr/analysis/ResonanceFrame.py
installing /data/prog/ccpnmr/ccpnmr1.0/python/ccpnmr/analysis/EditAssignmentPopu
p.py
installing /data/prog/ccpnmr/ccpnmr1.0/python/ccpnmr/analysis/ConstraintBasic.py
installing /data/prog/ccpnmr/ccpnmr1.0/python/ccpnmr/analysis/EditPeakListPopup.
py
installing /data/prog/ccpnmr/ccpnmr1.0/python/ccpnmr/analysis/CalcDistConstraint
sPopup.py
installing /data/prog/ccpnmr/ccpnmr1.0/python/ccpnmr/analysis/AnalysisPopup.py
installing /data/prog/ccpnmr/ccpnmr1.0/python/ccpnmr/analysis/Analysis.py
installing /data/prog/ccpnmr/ccpnmr1.0/python/ccpnmr/analysis/BrowseResonancesPo
pup.py
installing /data/prog/ccpnmr/ccpnmr1.0/python/ccpnmr/analysis/WindowPopup.py
installing /data/prog/ccpnmr/ccpnmr1.0/python/ccpnmr/analysis/MoleculeBasic.py
installing /data/prog/ccpnmr/ccpnmr1.0/python/ccpnmr/analysis/StructureBasic.py
installing /data/prog/ccpnmr/ccpnmr1.0/python/ccpnmr/analysis/DataAnalysisBasic.
py
installing /data/prog/ccpnmr/ccpnmr1.0/python/ccpnmr/analysis/CalcAmbigDistConst
raintsPopup.py
installing /data/prog/ccpnmr/ccpnmr1.0/python/ccpnmr/analysis/PeakBasic.py
installing /data/prog/ccpnmr/ccpnmr1.0/python/ccpnmr/analysis/BrowseConstraintsP
opup.py
installing /data/prog/ccpnmr/ccpnmr1.0/c/memops/global/fit.h
installing /data/prog/ccpnmr/ccpnmr1.0/python/ccpnmr/analysis/DataFitting.py
installing /data/prog/ccpnmr/ccpnmr1.0/python/ccpnmr/analysis/ExperimentBasic.py
installing /data/prog/ccpnmr/ccpnmr1.0/python/ccpnmr/analysis/WindowBasic.py
installing /data/prog/ccpnmr/ccpnmr1.0/python/ccpnmr/analysis/LinkSeqSpinSystems
Popup.py
installing /data/prog/ccpnmr/ccpnmr1.0/python/ccpnmr/analysis/AssignmentBasic.py
installing /data/prog/ccpnmr/ccpnmr1.0/python/ccpnmr/analysis/SecStructureGraphP
opup.py
installing /data/prog/ccpnmr/ccpnmr1.0/python/ccpnmr/analysis/EditMoleculePopup.
py
installing /data/prog/ccpnmr/ccpnmr1.0/python/ccpnmr/analysis/LinkNoeResonancesP
opup.py
installing /data/prog/ccpnmr/ccpnmr1.0/python/memops/gui/Menu.py
installing /data/prog/ccpnmr/ccpnmr1.0/python/ccpnmr/analysis/CopyChainAssignmen
tsPopup.py
installing /data/prog/ccpnmr/ccpnmr1.0/python/ccp/util/LabeledMolecule.py
installing /data/prog/ccpnmr/ccpnmr1.0/python/memops/universal/Ticks.py
installing /data/prog/ccpnmr/ccpnmr1.0/python/memops/gui/PartitionedSelector.py
installing /data/prog/ccpnmr/ccpnmr1.0/python/ccpnmr/analysis/EditMeasurementsPo
pup.py
installing /data/prog/ccpnmr/ccpnmr1.0/python/ccpnmr/analysis/NoeDistParamsFrame
.py
installing /data/prog/ccpnmr/ccpnmr1.0/c/memops/global/py_fit.c
installing /data/prog/ccpnmr/ccpnmr1.0/python/ccp/format/general/Util.py
installing /data/prog/ccpnmr/ccpnmr1.0/python/memops/general/Io.py
installing /data/prog/ccpnmr/ccpnmr1.0/python/memops/gui/ScrolledMatrix.py
installing /data/prog/ccpnmr/ccpnmr1.0/python/ccpnmr/analysis/OpenSpectrumPopup.
py
installing /data/prog/ccpnmr/ccpnmr1.0/c/ccpnmr/analysis/peak.c
installing /data/prog/ccpnmr/ccpnmr1.0/c/ccpnmr/analysis/peak.h
installing /data/prog/ccpnmr/ccpnmr1.0/python/ccpnmr/analysis/Util.py
cd memops/global; make clean
make[1]: Entering directory `/data/prog/ccpnmr/ccpnmr1.0/c/memops/global'
rm *.o
make[1]: Leaving directory `/data/prog/ccpnmr/ccpnmr1.0/c/memops/global'
cd ccp/structure; make clean
make[1]: Entering directory `/data/prog/ccpnmr/ccpnmr1.0/c/ccp/structure'
rm *.o
make[1]: Leaving directory `/data/prog/ccpnmr/ccpnmr1.0/c/ccp/structure'
cd ccpnmr/analysis; make clean
make[1]: Entering directory `/data/prog/ccpnmr/ccpnmr1.0/c/ccpnmr/analysis'
rm *.o
make[1]: Leaving directory `/data/prog/ccpnmr/ccpnmr1.0/c/ccpnmr/analysis'
cd ccpnmr/clouds; make clean
make[1]: Entering directory `/data/prog/ccpnmr/ccpnmr1.0/c/ccpnmr/clouds'
rm *.o
make[1]: Leaving directory `/data/prog/ccpnmr/ccpnmr1.0/c/ccpnmr/clouds'
cd memops/global; make
make[1]: Entering directory `/data/prog/ccpnmr/ccpnmr1.0/c/memops/global'
cc -c -O -DDO_NOT_HAVE_MALLOC -fPIC utility.c
cc -c -I/usr/include/python2.4 -O -DDO_NOT_HAVE_MALLOC -fPIC python_util.c
cc -c -O -DDO_NOT_HAVE_MALLOC -fPIC hash_list.c
cc -c -O -DDO_NOT_HAVE_MALLOC -fPIC hash_table.c
cc -c -O -DDO_NOT_HAVE_MALLOC -fPIC mem_cache.c
cc -c -O -DDO_NOT_HAVE_MALLOC -fPIC mutex.c
cc -c -I/usr/include/python2.4 -O -DDO_NOT_HAVE_MALLOC -fPIC py_mem_cache.c
cc -c -O -DDO_NOT_HAVE_MALLOC -fPIC block_file.c
cc -c -O -DDO_NOT_HAVE_MALLOC -fPIC int_array.c
cc -c -I/usr/include/python2.4 -O -DDO_NOT_HAVE_MALLOC -fPIC py_block_file.c
cc -shared -o BlockFile.so utility.o python_util.o hash_list.o hash_table.o mem_
cache.o mutex.o py_mem_cache.o block_file.o int_array.o py_block_file.o
cc -c -I/usr/include/python2.4 -I/usr/X11R6/include -I/usr/include -I/usr/inc
lude -I/usr/include -O -DDO_NOT_HAVE_MALLOC -fPIC gl_handler.c
cc -c -DUSE_GL_FALSE -I/usr/include/python2.4 -I/usr/X11R6/include -I/usr/inclu
de -I/usr/include -I/usr/include -O -DDO_NOT_HAVE_MALLOC -fPIC py_gl_handler.c
cc -c -I/usr/include/python2.4 -I/usr/X11R6/include -I/usr/include -I/usr/includ
e -O -DDO_NOT_HAVE_MALLOC -fPIC py_tk_util.c
cc -c -O -DDO_NOT_HAVE_MALLOC -fPIC w32func.c
cc -shared -o GlHandler.so -L/usr/X11R6/lib -L/usr/lib -L/usr/lib -L/usr/lib \
utility.o python_util.o gl_handler.o py_gl_handler.o py_tk_util.o w32fun
c.o -lglut -lGLU -lGL -ltk8.4 -ltcl8.4 -lX11 -lXext -lm
cc -shared -o MemCache.so utility.o python_util.o hash_list.o hash_table.o mem_c
ache.o mutex.o py_mem_cache.o
cc -c -O -DDO_NOT_HAVE_MALLOC -fPIC pdf_handler.c
cc -c -I/usr/include/python2.4 -O -DDO_NOT_HAVE_MALLOC -fPIC py_pdf_handler.c
cc -shared -o PdfHandler.so \
utility.o python_util.o pdf_handler.o py_pdf_handler.o
cc -c -O -DDO_NOT_HAVE_MALLOC -fPIC ps_handler.c
cc -c -I/usr/include/python2.4 -O -DDO_NOT_HAVE_MALLOC -fPIC py_ps_handler.c
cc -shared -o PsHandler.so \
utility.o python_util.o ps_handler.o py_ps_handler.o
cc -c -O -DDO_NOT_HAVE_MALLOC -fPIC fit.c
fit.c:829: error: conflicting types for 'run_fit'
fit.h:105: error: previous declaration of 'run_fit' was here
make[1]: *** [fit.o] Error 1
make[1]: Leaving directory `/data/prog/ccpnmr/ccpnmr1.0/c/memops/global'
make: *** [global] Error 2
Is this fixable?
Cheers
Ben
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