Hi Jim,
I find the graphical representation of the TLS motion determination site
(http://skuld.bmsc.washington.edu/~tlsmd/) very helpful. You only have to
feed it the final PDB to set up an automated TLS analysis. Im not sure if
you can submit your own TLS file...
Flip
-----Original Message-----
From: CCP4 bulletin board [mailto:[log in to unmask]] On Behalf Of Jim
Naismith
Sent: Thursday, November 15, 2007 9:18 AM
To: [log in to unmask]
Subject: [ccp4bb] TLSANAL
I have a multidomain multimeric protein. I would be interested to see if the
TLS parameters correlate with some functional data.
TLSANAL tanks with overlap error (no overlap that I am aware of). I fed it
tls file and final pdb.
Does anyone know any other way to interpret TLS parameters? (preferably in a
way that can be displayed in CCP4MG or pymol)
(I know about pymmlib, at the moment I am strill struggling with a new Linux
cluster and cant yet install it properly.)
best
Jim
James H. Naismith FRSE |Research mailto:[log in to unmask]
Professor of Chemical Biology |Teaching mailto:[log in to unmask]
Centre for Biomolecular Sciences |Office: 1334-463792
The North Haugh |Fax : 1334-467229
The University |Lab : 1334-467245
St. Andrews |In UK add 0 to start of number
Fife Scotland, U.K., KY16 9ST |http://www.st-and.ac.uk/~strucbio
|