Hello,
I'm a new Coot user, having switched to using Molprobity
and coming to Coot primarily because of the validation tools.
I am now running two versions, 0.3.3 on Linux and version
0.4 pre-release on Mac OSX and Linux. I have been having a few
problems and am wondering if other people have seen these:
1) The rotamer analysis works in 0.3.3, but 0.4 gives a
different analysis, with many more bad rotamers.
2) Molprobity reduce and probe worked until the update
to Molprobity3. Now the programs run, but there are no dots
displayed and the window with the clashes has no information
visible.
3) On some projects, the script for Coot from Molprobity
(older versions of both) gives a window with bad regions as
expected. On others, the window appears with bad regions but
the scroll bar is almost the size of the window, not allowing
scrolling through the bad regions. The projects where this happens
are large structures with about 4000 residues, so there may be a
problem with dimensions.
Lastly, Get Monomer is a great tool. How can we use it
if the name of the monomer is more than 3 letters long? The
monomer we are trying to get is beta-D-glucose.
Thank you, Marie
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