Here is the problem:
http://eds.bmc.uu.se/cgi-bin/eds/uusfs?pdbCode=1sjw
EDS won't make a map because it thinks your R-factor is too low compared
to the one it calculates.
So it isn't coot's fault at least.
William Scott wrote:
> I tried 1sjw and it failed in the way you described.
>
> I then tried one of mine (2goz) and it worked fine.
>
> Presumably this could happen if there is no 1sjw or the data are not
> available...
>
>
> Azmiri Sultana wrote:
>> Hi,I am using the coot version 0.4 pre 1 on my OSX leopard. Now, I can
>> not
>> use the options 'Get PDB and map from EDS' or 'get PDB
>> using accession code'. I get some mtz and ent files in the
>> coot-download
>> directory if I use the EDS server.
>> Here is the error message I get if I use EDS:
>>
>> "PDB Accession Code: 1sjw
>> read model status: #<closed: file 0>
>> read mtz status: #<closed: file 0>
>> Reading coordinate file: coot-download/pdb1sjw.ent
>> There was an error reading coot-download/pdb1sjw.ent.
>> ERROR 20 READ: Attempt to read unknown-type file.
>> No Spacegroup found for this PDB file
>> Cell: 1 1 1 90 90 90
>> There was a coordinates read error
>>>>>>>> CCP4 library signal mtz:File not identified as MTZ (Error)
>> raised in MtzGet <<<<<<
>> CCP4MTZfile: open_read - File missing or corrupted:
>> coot-download/1sjw_sigmaa.mtz
>> INFO:: not an mtz file: coot-download/1sjw_sigmaa.mtz
>> ERROR: no f_cols!
>> ERROR: no phi_cols!
>> WARNING:: label(s) not found in mtz file coot-download/1sjw_sigmaa.mtz
>> 2FOFCWT PH2FOFCWT
>>>>>>>> CCP4 library signal mtz:File not identified as MTZ (Error)
>> raised in MtzGet <<<<<<
>> CCP4MTZfile: open_read - File missing or corrupted:
>> coot-download/1sjw_sigmaa.mtz
>> INFO:: not an mtz file: coot-download/1sjw_sigmaa.mtz
>> ERROR: no f_cols!
>> ERROR: no phi_cols!
>> WARNING:: label(s) not found in mtz file coot-download/1sjw_sigmaa.mtz
>> FOFCWT PHFOFCWT
>> WARNING:: -1 is not a valid molecule in set_scrollable_map"
>>
>> If I use the PDB server I get the following error message:
>> "Reading coordinate file: coot-download/1sjw.pdb
>> There was an error reading coot-download/1sjw.pdb.
>> ERROR 41 READ: Non-existent or empty file.
>> No Spacegroup found for this PDB file
>> Cell: 1 1 1 90 90 90
>> There was a coordinates read error"
>>
>> This error msg is understandable because the PDB file in the coot
>> directory
>> empty. Why am I getting empty PDB file?
>>
>> Any help is greatly appreciated!!!
>>
>> Thanks,
>> Azmiri
>>
>
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