That sucks. Zie je morgen...! Hoe laat?
R.
-----Original Message-----
From: FSL - FMRIB's Software Library [mailto:[log in to unmask]]On
Behalf Of H.Steven Scholte
Sent: Thursday, October 04, 2007 9:43 PM
To: [log in to unmask]
Subject: [FSL] FSL compilation choice
Dear FSL experts, I am having a number of problems with the new FSL 4.01
upgrade and am wondering whether I installed the right compilation. I use
OpenSuse 10.2 and tried both the Centos4 and Centos5 compilations. Both
versions run without problems or error messages with the exception of the
following:
- for one or other reason fslview saves everything in Analyze format. No
matter what the setting of FSLOUTPUTTYPE.
- tbss_deproject complains about not finding particular files and crashes
with the message
terminate called after throwing an instance of 'std::bad_alloc'
what(): St9bad_alloc
- When using fslvbm_2_template, all images seem to be properly segmented
into GM, WM and CSF. The subsequent concatenation into the 4D Analyze
image "template_GM_4D" fails, however, because it tries to read the wrong
filenames.
Please see the error message in the last logfile created by fslvbm:
** ERROR (nifti_image_read): failed to find header file for 'np0002.nii.gz
_FAi_GM_to_T'
** ERROR: nifti_image_open(np0002.nii.gz
_FAi_GM_to_T): bad header info
Error: failed to open file np0002.nii.gz
_FAi_GM_to_T
Cannot open volume np0002.nii.gz
_FAi_GM_to_T for reading!
** ERROR (nifti_image_read): failed to find header file
for 'template_4D_GM'
** ERROR: nifti_image_open(template_4D_GM): bad header info
Error: failed to open file template_4D_GM
Cannot open volume template_4D_GM for reading!
Note that the file np0002_FAi_GM_to_T.nii.gz does exist and can be read
with fslview.
It looks like the problem is the erroneous filenames because it appends
the "_FA1_GM_to_T" after a [return] and after the [.nii.gz] extention.
I've tried leaving out the extension in the template file, but the error
persists as the [return] seems to throw the script off.
Should i maybe make the template without returns as separators but only
with blanks instead?
- Feat (admittedly with 80 EV's [want to do SVM classification])
/usr/local/fsl/bin/contrast_mgr stats design.con
** ERROR: nifti_image_open(stats/corrections): bad header info
On the plus side, the computers that I am using have 4-8 GB’s of memory
and 2 to 12 GB of swap and the 64-bits installation. Also, there is not a
diskspace problem.
Anyone any idea?
Many thanks,
Steven Scholte
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