hi,
i have been working with ted trying to get this going.
one thing is that the paths to the data we are working on are
slightly different on the head nodes and the cluster nodes, due to
the head node having the data mounted off of an xraid (and showing up
in /Volumes, which i then made symbolic links to the / directory) and
the nodes mounting the same directories at /nfs/ with symbolic links
to /
i have set up sge_aliases which are supposed to solve this, but still
it seems that when we submit a bedpost job through the GUI (which
forces the full path to be used - even if we type in the /
data_directory path it then resolves the actual full path) it ends up
in an error state in the queue.
when we submit the job via command line with the full path it fails.
when we submit the job with the /data_directory path it works.
i also want to run FEEDS on this to get more info, but it doesn't
seem to submit the job to the cluster and only runs on the head
node. is there a way to submit the FEEDS job to the cluster?
thanks,
lokke
On Oct 4, 2007, at 4:01 AM, Steve Smith wrote:
> Hi - sorry, you'll have to give us more information about exactly
> in what way it isn't working.
> Steve.
>
>
> On 3 Oct 2007, at 21:00, Ted Yanagihara wrote:
>
>> Using our mac cluster, I have been unable to run FSL jobs using
>> the GUI,
>> however running from the command line works fine. This has not
>> happened when
>> running the same data locally. Has anyone had this problem before?
>> What can
>> I do to troubleshoot this problem?
>>
>> Thanks everyone!!
>>
>> ted
>
>
> ----------------------------------------------------------------------
> -----
> Stephen M. Smith, Professor of Biomedical Engineering
> Associate Director, Oxford University FMRIB Centre
>
> FMRIB, JR Hospital, Headington, Oxford OX3 9DU, UK
> +44 (0) 1865 222726 (fax 222717)
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