fslmaths tbss_maxc -thr 0.95 -bin mask
On 17 Oct 2007, at 07:37, Naama Barnea-Goraly wrote:
>
> Sorry for being so vague - I am running TBSS and would like to save
> the "tbss_maxc" image thresholded for p value <0.05 (>0.949). It
> would make sense to use FSLview for that but I can't figure out how.
>
> Thanks,
>
> Naama
>
> On Oct 16, 2007, at 10:59 PM, Steve Smith wrote:
>
>> Hi - sorry, you need to be more specific - save the results from
>> what kind of analysis? Which FSL tool are you using, and which
>> statistical image are you wanting to create the mask from?
>>
>> Steve.
>>
>>
>> On 16 Oct 2007, at 21:55, Naama Barnea-Goraly wrote:
>>
>>>
>>> I have results I would like to use as a mask for correlation with
>>> behavioral data. My goal is to run a correlation analysis within
>>> regions of significant differences between groups. How do I save
>>> the results as a mask thresholded for p value?
>>>
>>> Thanks,
>>>
>>> Naama
>>>
>>> Naama Barnea-Goraly M.D.
>>> Research Associate
>>> Center for Interdisciplinary Brain Sciences Research
>>> Stanford University Division of Child and Adolescent Psychiatry
>>> 401 Quarry Rd. MC 5795
>>> Stanford University School of Medicine
>>> Stanford, CA 94305-5795
>>> fax: (650) 724-4794
>>> Phone: (650) 724-3779
>>>
>>>
>>> CONFIDENTIALITY NOTICE: This e-mail communication and any
>>> attachments may contain confidential information for the use of
>>> the designated recipients named above. If you are not the
>>> intended recipient, you are hereby notified that you have
>>> received this communication in error and that any review,
>>> disclosure, dissemination, distribution or copying of it or its
>>> contents is prohibited. If you have received this communication
>>> in error, please notify Stanford Medical Center immediately by
>>> telephone at (650) 725-5722 and destroy all copies of this
>>> communication and any attachments. Thank you.
>>>
>>>
>>
>>
>> ---------------------------------------------------------------------
>> ------
>> Stephen M. Smith, Professor of Biomedical Engineering
>> Associate Director, Oxford University FMRIB Centre
>>
>> FMRIB, JR Hospital, Headington, Oxford OX3 9DU, UK
>> +44 (0) 1865 222726 (fax 222717)
>> [log in to unmask] http://www.fmrib.ox.ac.uk/~steve
>> ---------------------------------------------------------------------
>> ------
>
>
> Naama Barnea-Goraly M.D.
> Research Associate
> Center for Interdisciplinary Brain Sciences Research
> Stanford University Division of Child and Adolescent Psychiatry
> 401 Quarry Rd. MC 5795
> Stanford University School of Medicine
> Stanford, CA 94305-5795
> fax: (650) 724-4794
> Phone: (650) 724-3779
>
>
> CONFIDENTIALITY NOTICE: This e-mail communication and any
> attachments may contain confidential information for the use of the
> designated recipients named above. If you are not the intended
> recipient, you are hereby notified that you have received this
> communication in error and that any review, disclosure,
> dissemination, distribution or copying of it or its contents is
> prohibited. If you have received this communication in error,
> please notify Stanford Medical Center immediately by telephone at
> (650) 725-5722 and destroy all copies of this communication and any
> attachments. Thank you.
>
>
------------------------------------------------------------------------
---
Stephen M. Smith, Professor of Biomedical Engineering
Associate Director, Oxford University FMRIB Centre
FMRIB, JR Hospital, Headington, Oxford OX3 9DU, UK
+44 (0) 1865 222726 (fax 222717)
[log in to unmask] http://www.fmrib.ox.ac.uk/~steve
------------------------------------------------------------------------
---
|