Thank you very much for your help! I read the mail you gave to me. However, I found we have different problems. In our case, we don’t want to only change L/R. However, We want to change the y axial and the z axial. Now, the z (y) axial should be A/P (S/I) but is S/I (A/P) now. I changed the orientation in NIFTI via "fslorient". However, after "tbss_1_preprocess", it is wrong, again. The "fslorient" looks seemly not work.
The "fslswapdim" is worked. However, I don't know how to change y axial and z axial by it.
Could you help me? I'm eager to your help.
Thanks, again!
Xiaochu
-----Original Message-----
From: Gwenaëlle DOUAUD [mailto:[log in to unmask]]
Sent: 2007年10月13日 22:05
To: [log in to unmask]
Subject: [FSL] RE : [FSL] The orientation problem in VBM analysis
Hi again Xiaochu,
for this orientational problem, please look at
http://www.jiscmail.ac.uk/cgi-bin/webadmin?A2=ind0709&L=FSL&P=R44248&I=-3
on the same subject...
Cheers,
Gwenaëlle
--- "Zhang, Xiaochu (NIH/NIDA) [F]"
<[log in to unmask]> a écrit :
> Hi experts,
>
> I am working on the VBM analysis. For the data is
> from multiple studies,
> some is sagitial and some is axial. After "tbss_1"
> and check the
> slicedir, the data showed inconsistent orientation.
> Who can help me and
> tell me how to change the orientation?
>
> Thanks a lot!
>
>
>
> Xiaochu Zhang Ph.D
>
> Visiting Research Fellow
>
> NIH/NIDA-IRP
>
> 5500 Nathan Shock Drive
>
> Baltimore MD 21224
>
>
>
> Tel: (410) - 550 - 1440 ext. 434
>
>
>
>
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