IIUC this is the problem of different flushing of C and Fortran code,
leading to the output appearing out of order.
For Linux you need to set
"export GFORTRAN_UNBUFFERED_ALL=Y"
i.e. put this in .bashrc or similar.
I don't do Macs, but I assume there is something similar .....
HTH
Martyn
On Mon, 2007-10-29 at 13:33 +0100, Justin Schmitz wrote:
> Hello All!
>
> I have a problem with the output there from CCP4 into the log files on
> a dual-Core Intel Mac with Os X Server 10.4 and CCP4 6.0.1.
>
>
> ATREF X ALL Y ALL Z ALL OCC ALL AOCC ALL B ALL
> ATOM13 Ano 0.147 -0.001 0.723 2.055 BFAC 20.000
> ATREF X ALL Y ALL Z ALL OCC ALL AOCC ALL B ALL
> ATOM14 Ano 0.347 0.519 0.895 0.939 BFAC 20.000
> ATREF X ALL Y ALL Z ALL OCC ALL AOCC ALL B ALL
> ATOM15 Ano 0.232 0.498 0.965 0.546 BFAC 20.000
> ATREF X ALL Y ALL Z ALL OCC ALL AOCC ALL B ALL
> ATOM16 Ano 0.031 0.124 0.022 -2.575 MLPHARE: Normal
> termination
> Times: User: 84.9s System: 0.3s Elapsed: 1:27
> </pre>
> </html>
> <!--SUMMARY_END--></FONT></B>
> BFAC 20.000
> ATREF X ALL Y ALL Z ALL OCC ALL AOCC ALL B ALL
> ATOM17 Ano 0.027 -0.001 0.859 2.450 BFAC 20.000
> ATREF X ALL Y ALL Z ALL OCC ALL AOCC ALL B ALL
> ATOM18 Ano 0.102 -0.002 0.870 3.247 BFAC 20.000
> ATREF X ALL Y ALL Z ALL OCC ALL AOCC ALL B ALL
> ATOM19 Ano 0.025 0.107 0.024 5.815 BFAC 20.000
> ATREF X ALL Y ALL Z ALL OCC ALL AOCC ALL B ALL
> ATOM20 Ano 0.024 0.072 0.069 5.565 BFAC 20.000
> ATREF X ALL Y ALL Z ALL OCC ALL AOCC ALL B ALL
>
>
>
> Many Programs do this e.g. refmac. The Termination message is passed
> to the log file before all other data is in it. This breaks of
> ploting or in case of mlphare of the whole process.
>
> Does anybody know how to handle this? Is it related to the OS or to
> CCP4?
>
>
> Thanks for helping another time justin
>
--
***********************************************************************
* *
* Dr. Martyn Winn *
* *
* STFC Daresbury Laboratory, Daresbury, Warrington, WA4 4AD, U.K. *
* Tel: +44 1925 603455 E-mail: [log in to unmask] *
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