Hi - there's a script called
first_roi_slicesdir
which should be good for generating pictures of first output - but
it's not been highly tested so you might need to tweak it.
Cheers, Steve.
On 16 Oct 2007, at 16:43, Stephen Towler wrote:
> It would be convenient to use slicesdir to produce a quick, scripted
> review of first's output. Can a combination of avw/fslmaths commands
> be used to create a volume combining the original T1 with a partially
> transparent mask from run_first all, like in this this screenshot from
> fslview? http://mbi-11.mbi.ufl.edu/~stowler/screenshots/
> fsl_first_transparent.png
>
> Thanks!
>
> --
> (please note email change from mbi.ufl.edu to ufl.edu)
>
> Stephen Towler
> [log in to unmask]
> 352-294-0048 office
> 352-258-6409 mobile
> 352-392-8347 fax
>
> Leonard Lab
> Department of Neuroscience
> PO Box 100244
> University of Florida HSC
> Gainesville, FL 32610
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Stephen M. Smith, Professor of Biomedical Engineering
Associate Director, Oxford University FMRIB Centre
FMRIB, JR Hospital, Headington, Oxford OX3 9DU, UK
+44 (0) 1865 222726 (fax 222717)
[log in to unmask] http://www.fmrib.ox.ac.uk/~steve
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