I have obtained my anatomical file from the scanner in minc format and I transformed it using an
inhouse mnc2nii program which has never had any problem. The conversion is in FLOAT-32 bit and
with a suffix .nii. I tried inputting the anatomical into bet and I got the following error:
/users/debas/Desktop/fsl/bin/bet /Users/debas/Desktop/petrides_05_20051006_143953_5_mri-
n3 /Users/debas/Desktop/petrides_05_20051006_143953_5_mri-n3_brain -f 0.5 -g 0
++ WARNING: nifti_read_buffer(/Users/debas/Desktop/petrides_05_20051006_143953_5_mri-
n3.nii):
data bytes needed = 46137344
data bytes input = 46137340
number missing = 4 (set to 0)
/users/debas/Desktop/fsl/bin/bet: line 383: 3616 Segmentation fault ${FSLDIR}/bin/bet2 $IN
$OUT $bet2opts
I am not too sure what I should do?
Thanks,
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