Hi,
I just applied some updates to analysis and got the following error in their installation
>>> installing /sw/ccpnmr/ccpnmr1.0/python/ccpnmr/analysis/CalcRatesPopup.py
installing /sw/ccpnmr/ccpnmr1.0/python/ccpnmr/analysis/FollowShiftChangesPopup.p
y
installing /sw/ccpnmr/ccpnmr1.0/python/ccpnmr/analysis/EditAssignmentPopup.py
installing /sw/ccpnmr/ccpnmr1.0/python/ccpnmr/analysis/ConstraintBasic.py
installing /sw/ccpnmr/ccpnmr1.0/python/ccpnmr/analysis/CalcDistConstraintsPopup.
py
installing /sw/ccpnmr/ccpnmr1.0/python/ccpnmr/analysis/BrowseResonancesPopup.py
installing /sw/ccpnmr/ccpnmr1.0/python/ccpnmr/analysis/WindowPopup.py
installing /sw/ccpnmr/ccpnmr1.0/python/ccpnmr/analysis/MoleculeBasic.py
installing /sw/ccpnmr/ccpnmr1.0/python/ccpnmr/analysis/CalcAmbigDistConstraintsP
opup.py
installing /sw/ccpnmr/ccpnmr1.0/python/ccpnmr/analysis/PeakBasic.py
installing /sw/ccpnmr/ccpnmr1.0/python/ccpnmr/analysis/BrowseConstraintsPopup.py
installing /sw/ccpnmr/ccpnmr1.0/python/ccpnmr/analysis/DataFitting.py
installing /sw/ccpnmr/ccpnmr1.0/python/ccpnmr/analysis/CopyPeakAssignmentsPopup.
py
installing /sw/ccpnmr/ccpnmr1.0/python/ccpnmr/analysis/LinkSeqSpinSystemsPopup.p
y
installing /sw/ccpnmr/ccpnmr1.0/python/ccpnmr/analysis/LinkNoeResonancesPopup.py
installing /sw/ccpnmr/ccpnmr1.0/python/ccpnmr/analysis/CopyChainAssignmentsPopup
.py
installing /sw/ccpnmr/ccpnmr1.0/python/ccp/util/LabeledMolecule.py
File "/sw/ccpnmr/ccpnmr1.0/python/ccp/util/LabeledMolecule.py", line 191
molWeightSum = sum(x.weight for x in molLabelFractions)
^
SyntaxError: invalid syntax
installing /sw/ccpnmr/ccpnmr1.0/python/memops/universal/Ticks.py
installing /sw/ccpnmr/ccpnmr1.0/python/memops/gui/PartitionedSelector.py
installing /sw/ccpnmr/ccpnmr1.0/python/ccpnmr/analysis/EditMeasurementsPopup.py
installing /sw/ccpnmr/ccpnmr1.0/python/ccpnmr/analysis/NoeDistParamsFrame.py
And now the following similar error when I run analysis
Traceback (most recent call last):
File "/sw/ccpnmr/ccpnmr1.0/python/ccpnmr/analysis/AnalysisGui.py", line 72, in
?
from ccpnmr.analysis.AnalysisPopup import AnalysisPopup
File "/sw/ccpnmr/ccpnmr1.0/python/ccpnmr/analysis/AnalysisPopup.py", line 92,
in ?
from ccpnmr.analysis.Analysis import Analysis
File "/sw/ccpnmr/ccpnmr1.0/python/ccpnmr/analysis/Analysis.py", line 76, in ?
from ccpnmr.analysis import MoleculeBasic
File "/sw/ccpnmr/ccpnmr1.0/python/ccpnmr/analysis/MoleculeBasic.py", line 65,
in ?
from ccp.util.LabeledMolecule import getIsotopomerSingleAtomFractions, getIs
otopomerAtomPairFractions
File "/sw/ccpnmr/ccpnmr1.0/python/ccp/util/LabeledMolecule.py", line 191
molWeightSum = sum(x.weight for x in molLabelFractions)
^
SyntaxError: invalid syntax
I am running Mac OSX 10.3.9 on a power pc.
Thanks,
Mike
Michael Latham
Graduate Student
Department of Chemistry and Biochemistry
University of Colorado, Boulder
Phone: 303-492-8085
Fax: 303-492-2439
---- Original message ----
>Date: Tue, 23 Oct 2007 19:27:55 +0100
>From: Tim Stevens <[log in to unmask]>
>Subject: Re: Faster Windows
>To: [log in to unmask]
>
>Hi Vicky,
>
>The fix I just posted after Brian's observations may help with this a bit.
>Please let me know if you see any difference on the slow computer.
>
>In answer to your question (and Wayne can correct me if I'm wrong), the
>countour file dims match the order of the spectrum dims. This is usually
>the same as ExpDims in Analysis, but often won't match RefExpDims. The
>spectrum referencing/tolerances section (and peak dim order in the
>EditAssignment popup) will give a reliable indication of spectrum
>dimension order.
>
>T.
>
>
>>
>> this definitely speeds things up - thanks a lot.
>>
>> Over the last couple of days I have been trying to help someone with a
>> slightly sluggish computer and unfortunately things are still a bit slow
>> for her. When she just has a couple of spectra shown in a window it
>> works okay, but as she adds more, it gets really slow and shows some
>> contours, but no peaks, then the peaks and no contours, then other
>> contours etc. for several permutations until it finally manages to show
>> everything. I fear this may be a memory issue given that it gets worse
>> as more spectra are selected.
>> I thought contour files might be the way forward, but then it got even
>> worse - as soon as the mouse was moved, the contours went away and it
>> generally seemed to be behaving very strangely. I wondered if we had
>> simply selected the wrong dimensions (we just used the 1,2 default). We
>> had a look at the Experiment types so as to decide which dimensions we
>> should go for, but realised that we didn't know whether to go by the
>> 'Exp Dim' or the 'Ref Exp Dim'. Could you advise us?
>>
>> > Just to let you know that I've managed to make a few improvements to the
>> > spectrum window display in Analysis which has removed many of the
>> > unnecessary screen updates. Hopefully this will make things smoother
>> > generally and should make a noticeable difference when dealing with strips
>> > & resizing.
>
>
>
>
>-------------------------------------------------------------------------------
> Dr Tim Stevens Email: [log in to unmask]
> Department of Biochemistry [log in to unmask]
> University of Cambridge Phone: +44 1223 766018 (office)
> 80 Tennis Court Road +44 7816 338275 (mobile)
> Old Addenbrooke's Site +44 1223 364613 (home)
> Cambridge CB2 1GA WWWeb: http://www.bio.cam.ac.uk/~tjs23
> United Kingdom http://www.pantonia.co.uk
>-------------------------------------------------------------------------------
>------ +NH3CH(CH(CH3)OH)C(O)NHCH(CH(CH3)CH2CH3)C(O)NHCH(CH2CH2SCH3)CO2- -------
>-------------------------------------------------------------------------------
|