Hi,
Yes there is an easy feature for this - use the Renderhighres GUI to
upsample the stats into highres or standard space. You can view
overlays in FSLView or using slicer/slices.
If you really want to throw away dimensionality and show MIPs ;-) you
can use the -Zmax (etc) option in fslmaths, e.g.
fslmaths thresh_zstat1 -Zmax axialMIP
The files in /stats when loaded into FSLView presumably are coming up
with the default colour table set to red-yellow - you can change this
easily - see the FSLView manual.
Cheers.
On 26 Sep 2007, at 20:55, Carlos Faraco wrote:
> I apologize if this question has been asked beore, but I do not
> seem to find
> the answer and this is my first time running FEAT so I am somewhat
> lost.
>
> Is there a FEAT output file that solely displays the activated
> clusters/voxels in a standard space (such as the "glass brain"
> output of
> SPM)? I know there is the cluster_mask, but this seems extremely
> difficult
> to navigate through. Would I have to do an overlay of the
> cluster_mask on a
> standard space to accomplish this?
>
> Additionally, when looking at the files in /stats they have an orange
> background, is this normal?
>
> Thanks,
>
> Carlos Faraco
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Stephen M. Smith, Professor of Biomedical Engineering
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