I've seen the same thing with various files, too. I've found that the "extra" distances can usually be eliminated by turning off the "show symmetry" option. I don't have any examples on hand, but it happens sporadically. I'll be going through a model and they will have "extra" distances for a while, then go back to normal again.
Chris
> -----Original Message-----
> From: Mailing list for users of COOT Crystallographic
> Software [mailto:[log in to unmask]] On Behalf Of Paul Emsley
> Sent: Tuesday, September 11, 2007 4:08 AM
> To: [log in to unmask]
> Subject: Re: [COOT] Environment Distances that label EVERYTHING
>
> Hi David,
>
> > (using Coot 0.33 on Intel Mac, pre-compiled distribution.)
>
> 0.3.3 presumably.
>
> > I really like using the "environment distance" option
> whilst strolling
> > around my model, rebuilding. However, It seems to have
> started to label
> > all distances, including self-self distance ( 0.00A) and distances
> > between adjacent atoms in the side- and main- chain. Whilst this is
> > great for checking bond lengths, it get a little "busy"
> while checking
> > Trps etc.
>
>
> That's very curious. I've not seen that before. I can't
> reproduce it.
>
>
> > It only seems to start this quirk when I go from my first
> Chain (A) to
> > my second chain (M).
>
> Hmm... perhaps you have accidentally merged a copy of the M
> chain (there
> are now 2 sets of atoms in the same space for some residues
> of the M chain)?
>
> If not, if you can send me a pdb file fragment that reproduces this
> (e.g. a few residues of A chain and a few of M chain) I'll
> fix it before
> 0.4.
>
> Paul.
>
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