Thanks a lot for Francesco, Ethan, and Jessica. Yes, it is ESPrit.
For unknown reasons, when I use keywords: "sequence + alignment +
tools" in google that server never showed up.
It is also worthy to look at the other servers suggested in the
reply given below:
Francesco
Charlie Bond has a really nice program called ALINE. He used to have
it on his website http://stein.bioch.dundee.ac.uk/~charlie/index.php? section=6
Alternatively, you can just e-mail him [log in to unmask]
Ethan Merritt
I use TeXShade
<http://www.ctan.org/tex-archive/help/Catalogue/entries/texshade.html>
But it's a TeX package, not a web server.
Might you be thinking of <http://wavis.img.cas.cz/> ?
Jessica Lynn,
Espript can do exactly what you're asking, and if I figured it out, you'll be
able to easily. I bet it's what you used before. It's really powerful.
http://espript.ibcp.fr/ESPript/ESPript/
thanks a lot,
Ibrahim
At 05:22 PM 9/25/2007, you wrote:
>Hi all,
>
> I'm looking for a webserver that can take the alignment and
> produce a nice figure with the alignment annotated with sec. structure on top,
>
> and draw boxes around conserved residues. Long time ago I had
> used a server doing exactly what I described; unfortunately, I lost
> the information
>
> of that server from my computer and the memory could not help to
> find it in google. I'm sure there are many tools, but I'm
> interested in an easy-to-use one.
>
> Something to plugin the sequence/alignment and get a pretty
> alignment figure.
>
> I'd be appreciating if someone out there could point me to that
> server or similar ones.
>
> I looked at several tools available online in Expasy but none is
> doing what I did before.
>
> thanks in advance for your help.
>
> Ibrahim
>
>
>
>
>----------------------------------------------------------------------------------------------------------
>Ibrahim M. Moustafa, Ph.D.
>Biochemistry and Molecular Biology Dept.
>201 Althouse Lab., University Park
>Pennsylvania State University, PA16802
>
>Tel. (814)863-8703
>Fax. (814)865-7927
>----------------------------------------------------------------------------------------------------------
>
----------------------------------------------------------------------------------------------------------
Ibrahim M. Moustafa, Ph.D.
Biochemistry and Molecular Biology Dept.
201 Althouse Lab., University Park
Pennsylvania State University, PA16802
Tel. (814)863-8703
Fax. (814)865-7927
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