If you just want the residues involved in the interface, you can use the
byres selection commands in Pymol.
select contacts, (byres monA and (monB around 4))
which will show all the residues on monA that are within 4 Ang. of Mon
B.
Steve
-----Original Message-----
From: CCP4 bulletin board [mailto:[log in to unmask]] On Behalf Of
Xiaoyi Deng
Sent: Thursday, September 20, 2007 1:26 PM
To: [log in to unmask]
Subject: [ccp4bb] How to calculate the contacts between the dimer-dimer
interface
Dear all:
I used moleman2 to calculate the contacts between chain A and B. Can
anyone suggest a program to calculate the contacts between the interface
of dimer-dimer?
Thank you,
Xiaoyi
Graduate student
University of Nebraska Medical center
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