Hi,
I'm afraid I can't work out what you're asking. BET outputs a brain-
extracted version of whatever you feed into it......?
Cheers.
On 28 Aug 2007, at 17:26, Evangelou, Iordanis (NIH/NINDS) [F] wrote:
> Hi all
>
> We have just installed new FSL 4.0 on our Linux machines and when
> running the following command on our (b=0) volumes
>
> bet b0 b0_brain -m -o -f 0.2 -g -0.1
>
> we see that the image is the intensity inhomogeneity corrected. Is
> there any way to get the original image stripped?
>
> Thanks in advance
>
> Jordan
>
> -------------------------------------------------------------------
> Iordanis E. Evangelou, DPhil
> Postdoctoral Fellow
> Neuroimmunology Branch
> National Institute of Neurological Disorders and Stroke
> National Institutes of Health
> Building 10, Room 5B16
> Bethesda, MD 20892
> USA
> -------------------------------------------------------------------
>
>
> From: Ethan J [mailto:[log in to unmask]]
> Sent: Tuesday, August 28, 2007 11:48 AM
> To: [log in to unmask]
> Subject: [FSL] how to interpret randomise -T results?
>
> Hello,
>
> I have a set of TBSS results for 14 subjects. After running the
> randomise option to evaluate correlations of FA with some
> behavioral measure, I am trying to make sense of the results. I
> used the TFCE option and I have two sets of TFCE outputs -
> tbss_tfce_tstat1 & tbss_max_tfce_tstat1.
> How do I interpret these results? For the tbss_max_tfce_tstat1, the
> values represent FWE corrected p values? So should I used the
> regular min 0.949 max 1 setting to interpret my results?
> Wht do the voxel values in the tbss_tfce_tstat1 mean?
>
> Thanks,
> EJ
>
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Stephen M. Smith, Professor of Biomedical Engineering
Associate Director, Oxford University FMRIB Centre
FMRIB, JR Hospital, Headington, Oxford OX3 9DU, UK
+44 (0) 1865 222726 (fax 222717)
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