Hi - this is most likely because the creation of all_FA_skeleltonised
is failing due to lack of sufficient RAM, or because you have a lot
of subjects and a 32-bit machine can't handle the max process size
limit.
Cheers.
On 22 Aug 2007, at 15:23, <ERIK> <O'Hanlon> <[log in to unmask]> wrote:
> Hello,
>
> I'm trying to run TBSS for the first time and have got as far as the
> tbss_4_prestats stage. At this point it errors out with
>
> /usr/support/mrisoftware/fsl-3.3/bin/tbss_4_prestats: line 23:
> 20462 Aborted
> ${FSLDIR}/bin/tbss_skeleton -i mean_FA -p $thresh
> mean_FA_skeleton_mask_dst ${FSLDIR}/etc/standard/lower-cingulum all_FA
> all_FA_skeletonised
>
> I've tried to run the script from this point by inputting the
> tbss_skeleton
> and I'm a little confused here as the script needs the
> all_FA_skeleltonised
> file but I don't have this. When is this generated along the
> pipeline? Is
> it not here?
>
> Any help much appreciated
>
> Thanks
>
> Erik
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Stephen M. Smith, Professor of Biomedical Engineering
Associate Director, Oxford University FMRIB Centre
FMRIB, JR Hospital, Headington, Oxford OX3 9DU, UK
+44 (0) 1865 222726 (fax 222717)
[log in to unmask] http://www.fmrib.ox.ac.uk/~steve
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