Two other issues related to the new FSLVIEW, at least as it impacts my data.
In comparison to the FSLVIEW in FSL 3.3, when I look at DTI data using the FSLVIEW in FSL 4.0
using V1 and FA, the axial and coronal images are displaced to the left of the display box (to the right of the head) by about 40 per cent of the FOV,
and the lines don't "look right". Does this reflect some change in the detection of orientation between the two versions?
-roddy
>>> Matt Glasser <[log in to unmask]> 8/21/2007 9:50 AM >>>
Hi,
The new version of FSLView has the annoying habit of taking the cal_max from
the NIFTI header of the FA and using it when displaying the FA modulated
color map no matter what the Max is set to inside FSLView. This means that
if a high cal_max value is set somewhere in the preprocessing chain, you
can't display an FA modulated color map in FSLView without manually editing
the header to change cal_max to 1. It would be better if FSLView used the
value in the Max box or assumed all FAs had a max of one.
Thanks,
Matt.
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