HI - I would try to separate out the issue of the node that it is
running on from any possible SGE interaction (eg the queue killing
FILM because it's asking for more ram or time than the queue allows).
Can you log onto the same node without going via the queueing
software and try running the FEAT?
Cheers.
On 14 Aug 2007, at 15:38, N.M. van Strien wrote:
> Hi,
>
> Thank you for yet another great release!
>
> I have tried to use FSL4 in our cluster environment. I used the
> centos4_x64
> distro. The centos5_x64 reported a floating point error.
>
> However, with the centos4_x64 build, the example data suite exits
> normally
> with all tests passed. However, for some reason FILM_GLS terminates
> prematurely on the nodes when I run my own dataset. The error is:
>
> Error: FILM did not complete - it probably ran out of memory. After
> this a
> process called contrast_manager takes over all cpu resources untill
> it is
> killed.
>
> Each node is equipped with 4 GB of RAM and the process takes only
> 800 MB or
> so. The analysis terminates normally on my own machine, running the
> same
> centos4_x64 build. Any ideas where to find a solution?
>
> Thank you!
>
> Niels van Strien
> VU University medical center
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Stephen M. Smith, Professor of Biomedical Engineering
Associate Director, Oxford University FMRIB Centre
FMRIB, JR Hospital, Headington, Oxford OX3 9DU, UK
+44 (0) 1865 222726 (fax 222717)
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