Hi Adam,
I'm using ppge as well (UCSD). I used AFNI to correct the image orientation
with:
% 3dresample -prefix newfilename -inset input.nii.gz -orient LPI
% 3dAFNItoNIFTI newfilename+orig
I don't know if that will fix your problem or not, but it's worth a try.
--Ruth
|