I would think this should be ok. Are you running the current version
of FSL (3.3)?
Feel free to upload the image and we can take a look.
Please upload the files in a single compressed tarfile to
http://www.fmrib.ox.ac.uk/cgi-bin/upload.cgi
and then email me the upload ID.
Cheers, Steve.
On 4 Jul 2007, at 23:33, Lynne Gauthier wrote:
> Dear FSLers,
>
> I am having some trouble running FAST. It instantly gives me the
> following error:
>
> Unknown file format!
> Finished
>
> I am able to run BET and SIENA on the same file. Any ideas why
> FAST doesn't like it? Suggestions
> would be greatly appreciated. Here's the information about the
> file from avwhd:
>
> sizeof_hdr 348
> data_type INT16
> dim0 3
> dim1 256
> dim2 256
> dim3 150
> dim4 1
> dim5 1
> dim6 1
> dim7 1
> vox_units mm
> time_units Unknown
> datatype 4
> nbyper 2
> bitpix 16
> pixdim0 0.0000000000
> pixdim1 0.9375000000
> pixdim2 0.9375000000
> pixdim3 1.0000000000
> pixdim4 1.0000000000
> pixdim5 1.0000000000
> pixdim6 1.0000000000
> pixdim7 1.0000000000
> vox_offset 0
> cal_max 0.0000
> cal_min 0.0000
> scl_slope 1.000000
> scl_inter 0.000000
> phase_dim 1
> freq_dim 2
> slice_dim 3
> slice_name Unknown
> slice_code 0
> slice_start 0
> slice_end 149
> slice_duration 0.000000
> time_offset 0.000000
> intent Unknown
> intent_code 0
> intent_name
> intent_p1 0.000000
> intent_p2 0.000000
> intent_p3 0.000000
> qform_name Scanner Anat
> qform_code 1
> qto_xyz:1 -0.937500 0.000000 -0.000000 120.116997
> qto_xyz:2 0.000000 0.937500 -0.000000 -104.248993
> qto_xyz:3 0.000000 0.000000 1.000000 -67.475899
> qto_xyz:4 0.000000 0.000000 0.000000 1.000000
> qform_xorient Right-to-Left
> qform_yorient Posterior-to-Anterior
> qform_zorient Inferior-to-Superior
> sform_name Unknown
> sform_code 0
> sto_xyz:1 0.000000 0.000000 0.000000 0.000000
> sto_xyz:2 0.000000 0.000000 0.000000 0.000000
> sto_xyz:3 0.000000 0.000000 0.000000 0.000000
> sto_xyz:4 0.000000 0.000000 0.000000 0.000000
> sform_xorient Unknown
> sform_yorient Unknown
> sform_zorient Unknown
> file_type NIFTI-1
> file_code 2
> descrip AX T1 3D FSPGR
> aux_file
>
> Thanks!
------------------------------------------------------------------------
---
Stephen M. Smith, Professor of Biomedical Engineering
Associate Director, Oxford University FMRIB Centre
FMRIB, JR Hospital, Headington, Oxford OX3 9DU, UK
+44 (0) 1865 222726 (fax 222717)
[log in to unmask] http://www.fmrib.ox.ac.uk/~steve
------------------------------------------------------------------------
---
|