Hi
I send the data on the website (555 433) .
But I don't understand what should I do with the version of Cygwin (this one
on the site isn't good ? we have installed it on diffrents machines (1 or 2
processors and it doesn't seemed to work)
) . In cas I found the bc program what should I do with it ?
I'll be very happy if someone could answer me precisely
thanks.
>From: Tim Behrens <[log in to unmask]>
>Reply-To: FSL - FMRIB's Software Library <[log in to unmask]>
>To: [log in to unmask]
>Subject: Re: [FSL] Bedpost trouble
>Date: Tue, 17 Jul 2007 16:06:12 +0100
>
>Hi -
>Is it the case that the problem is the same on the linux and cygwin
>machines.
>If so, could you upload the input data directory and the bedpost directory
>onto our system
>www.fmrib.ox.ac.uk/cgi-bin/upload.cgi
>
>and send us the relevant number
>
>
>Thanks
>
>Tim
>
>On 17 Jul 2007, at 14:04, jonathan bosse wrote:
>
>>Hi,
>>the version of cygwin that we have is the one with a link on 'your' web
>>site (http://fsl.fmrib.ox.ac.uk/fsl/) but the problem is that it doesn't
>>work with Linux too, I 've got the same problem (i think it is but i'm
>>not sure : it seeems like fsl could not process any second slice) (it is
>>always written " 0 slices processed .... 1 slices processed....1silces
>>processed...1slices processed.... 1slices.....).
>>I found a bc-1.06 progam for cygwin.
>>sorry, I don't understand what do you mean with 'put it in your path'
>>thanks.
>>
>>
>>>From: Tim Behrens <[log in to unmask]>
>>>Reply-To: FSL - FMRIB's Software Library <[log in to unmask]>
>>>To: [log in to unmask]
>>>Subject: Re: [FSL] Bedpost trouble
>>>Date: Tue, 17 Jul 2007 12:28:21 +0100
>>>
>>>Hi - the problem is that your cygwin OS cannot see a program called bc.
>>>This is a standard program in UNIX distributions.
>>>
>>>This either means that you installed a lightweight version of cygwin
>>>that does not contain bc, or that your version of bc is not in your
>>>path.
>>>
>>>If it is the former, you either need to completely reinstall cygwin,
>>>and choose the_complete_ installation, i.e. "select all", or find a
>>>version of bc for cygwin, and put it in your path.
>>>
>>>Cheers
>>>
>>>T
>>>
>>>On 17 Jul 2007, at 11:04, jonathan bosse wrote:
>>>
>>>>thanks for the reply
>>>>DTIFIT works on my data.
>>>>I send bedpost_datacheck
>>>>thanks.
>>>>
>>>>
>>>>>From: Tim Behrens <[log in to unmask]>
>>>>>Reply-To: FSL - FMRIB's Software Library <[log in to unmask]>
>>>>>To: [log in to unmask]
>>>>>Subject: Re: [FSL] Bedpost trouble
>>>>>Date: Tue, 17 Jul 2007 10:33:20 +0100
>>>>>
>>>>>Hi - does dtifit work ok on your data?
>>>>>And can you send the output of bedpost_datacheck
>>>>>
>>>>>Thanks
>>>>>T
>>>>>
>>>>>On 17 Jul 2007, at 09:43, Jonathan Bosse wrote:
>>>>>
>>>>>>Hi,
>>>>>>I'm trying to do a bedpost ( 18 directions, 3 and 40(target)
>>>>>>slices) band
>>>>>>I wait more than 3 days (for 3 slices) even with cygwin or with
>>>>>>Linux,
>>>>>>when I'm looking to the *.bedpost directory, I can see only the
>>>>>>first
>>>>>>slice (with linux it's written "0 slices processed... 1 slices
>>>>>>processed... 1 slices processed... 1 slices processed (again and
>>>>>>again)".
>>>>>>I've run the feeds and it seems to work (there's an error message
>>>>>>but
>>>>>>there's a result) (the feeds data has only 1 slice) (but
>>>>>>tractography in
>>>>>>only one slice isn't very significant).
>>>>>>But all the other functions of fsl seemed to work (fdt, melodic..)
>>>>>>So I join the fslerrorreport of my data (18 directions, 3 slices).
>>>>>>Thank you for the help.
>>>>>><fsl_nab4aS.gz>
>>>>
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>>>><bedpost_datacheck.pdf>
>>
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