Hi Matt -
I think bedpost should be ok with this (but I am not 100% sure) Nice
spot though.
Thanks
T
On 17 Jul 2007, at 16:21, Matt wrote:
> Tim,
>
> Perhaps the cause is that D4 (dt) is zero instead of 1 in data and
> nodif.
>
> Peace,
>
> Matt.
>
> -----Original Message-----
> From: FSL - FMRIB's Software Library [mailto:[log in to unmask]] On
> Behalf
> Of Tim Behrens
> Sent: Tuesday, July 17, 2007 11:06 AM
> To: [log in to unmask]
> Subject: Re: [FSL] Bedpost trouble
>
> Hi -
> Is it the case that the problem is the same on the linux and cygwin
> machines.
> If so, could you upload the input data directory and the bedpost
> directory onto our system
> www.fmrib.ox.ac.uk/cgi-bin/upload.cgi
>
> and send us the relevant number
>
>
> Thanks
>
> Tim
>
> On 17 Jul 2007, at 14:04, jonathan bosse wrote:
>
>> Hi,
>> the version of cygwin that we have is the one with a link on 'your'
>> web site (http://fsl.fmrib.ox.ac.uk/fsl/) but the problem is that
>> it doesn't work with Linux too, I 've got the same problem (i think
>> it is but i'm not sure : it seeems like fsl could not process any
>> second slice) (it is always written " 0 slices processed .... 1
>> slices processed....1silces processed...1slices processed....
>> 1slices.....).
>> I found a bc-1.06 progam for cygwin.
>> sorry, I don't understand what do you mean with 'put it in your path'
>> thanks.
>>
>>
>>> From: Tim Behrens <[log in to unmask]>
>>> Reply-To: FSL - FMRIB's Software Library <[log in to unmask]>
>>> To: [log in to unmask]
>>> Subject: Re: [FSL] Bedpost trouble
>>> Date: Tue, 17 Jul 2007 12:28:21 +0100
>>>
>>> Hi - the problem is that your cygwin OS cannot see a program
>>> called bc. This is a standard program in UNIX distributions.
>>>
>>> This either means that you installed a lightweight version of
>>> cygwin that does not contain bc, or that your version of bc is
>>> not in your path.
>>>
>>> If it is the former, you either need to completely reinstall
>>> cygwin, and choose the_complete_ installation, i.e. "select all",
>>> or find a version of bc for cygwin, and put it in your path.
>>>
>>> Cheers
>>>
>>> T
>>>
>>> On 17 Jul 2007, at 11:04, jonathan bosse wrote:
>>>
>>>> thanks for the reply
>>>> DTIFIT works on my data.
>>>> I send bedpost_datacheck
>>>> thanks.
>>>>
>>>>
>>>>> From: Tim Behrens <[log in to unmask]>
>>>>> Reply-To: FSL - FMRIB's Software Library <[log in to unmask]>
>>>>> To: [log in to unmask]
>>>>> Subject: Re: [FSL] Bedpost trouble
>>>>> Date: Tue, 17 Jul 2007 10:33:20 +0100
>>>>>
>>>>> Hi - does dtifit work ok on your data?
>>>>> And can you send the output of bedpost_datacheck
>>>>>
>>>>> Thanks
>>>>> T
>>>>>
>>>>> On 17 Jul 2007, at 09:43, Jonathan Bosse wrote:
>>>>>
>>>>>> Hi,
>>>>>> I'm trying to do a bedpost ( 18 directions, 3 and 40(target)
>>>>>> slices) band
>>>>>> I wait more than 3 days (for 3 slices) even with cygwin or
>>>>>> with Linux,
>>>>>> when I'm looking to the *.bedpost directory, I can see only
>>>>>> the first
>>>>>> slice (with linux it's written "0 slices processed... 1 slices
>>>>>> processed... 1 slices processed... 1 slices processed (again
>>>>>> and again)".
>>>>>> I've run the feeds and it seems to work (there's an error
>>>>>> message but
>>>>>> there's a result) (the feeds data has only 1 slice) (but
>>>>>> tractography in
>>>>>> only one slice isn't very significant).
>>>>>> But all the other functions of fsl seemed to work (fdt,
>>>>>> melodic..)
>>>>>> So I join the fslerrorreport of my data (18 directions, 3
>>>>>> slices).
>>>>>> Thank you for the help.
>>>>>> <fsl_nab4aS.gz>
>>>>
>>>> _________________________________________________________________
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>>>> messenger/bouygues/
>>>> <bedpost_datacheck.pdf>
>>
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