Hi,
the version of cygwin that we have is the one with a link on 'your' web site
(http://fsl.fmrib.ox.ac.uk/fsl/) but the problem is that it doesn't work
with Linux too, I 've got the same problem (i think it is but i'm not sure :
it seeems like fsl could not process any second slice) (it is always written
" 0 slices processed .... 1 slices processed....1silces processed...1slices
processed....1slices.....).
I found a bc-1.06 progam for cygwin.
sorry, I don't understand what do you mean with 'put it in your path'
thanks.
>From: Tim Behrens <[log in to unmask]>
>Reply-To: FSL - FMRIB's Software Library <[log in to unmask]>
>To: [log in to unmask]
>Subject: Re: [FSL] Bedpost trouble
>Date: Tue, 17 Jul 2007 12:28:21 +0100
>
>Hi - the problem is that your cygwin OS cannot see a program called bc.
>This is a standard program in UNIX distributions.
>
>This either means that you installed a lightweight version of cygwin that
>does not contain bc, or that your version of bc is not in your path.
>
>If it is the former, you either need to completely reinstall cygwin, and
>choose the_complete_ installation, i.e. "select all", or find a version of
>bc for cygwin, and put it in your path.
>
>Cheers
>
>T
>
>On 17 Jul 2007, at 11:04, jonathan bosse wrote:
>
>>thanks for the reply
>>DTIFIT works on my data.
>>I send bedpost_datacheck
>>thanks.
>>
>>
>>>From: Tim Behrens <[log in to unmask]>
>>>Reply-To: FSL - FMRIB's Software Library <[log in to unmask]>
>>>To: [log in to unmask]
>>>Subject: Re: [FSL] Bedpost trouble
>>>Date: Tue, 17 Jul 2007 10:33:20 +0100
>>>
>>>Hi - does dtifit work ok on your data?
>>>And can you send the output of bedpost_datacheck
>>>
>>>Thanks
>>>T
>>>
>>>On 17 Jul 2007, at 09:43, Jonathan Bosse wrote:
>>>
>>>>Hi,
>>>>I'm trying to do a bedpost ( 18 directions, 3 and 40(target) slices)
>>>>band
>>>>I wait more than 3 days (for 3 slices) even with cygwin or with Linux,
>>>>when I'm looking to the *.bedpost directory, I can see only the first
>>>>slice (with linux it's written "0 slices processed... 1 slices
>>>>processed... 1 slices processed... 1 slices processed (again and
>>>>again)".
>>>>I've run the feeds and it seems to work (there's an error message but
>>>>there's a result) (the feeds data has only 1 slice) (but tractography
>>>>in
>>>>only one slice isn't very significant).
>>>>But all the other functions of fsl seemed to work (fdt, melodic..)
>>>>So I join the fslerrorreport of my data (18 directions, 3 slices).
>>>>Thank you for the help.
>>>><fsl_nab4aS.gz>
>>
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>><bedpost_datacheck.pdf>
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