Thank you! It does.
On Jun 29, 2007, at 1:04 AM, Steve Smith wrote:
> Hi - it's not very clear what you're asking for, but I'll take a stab:
>
> With the cluster program you can get two different outputs with the
> various options, one which fills each cluster up with the cluster
> index number and another which fills each cluster up with the cluster
> size (-o and --osize options).
>
> Note that options with two "--" at the start require a "=" between the
> option and the image name, e.g.:
> -o outindeximage --osize=outsizeimage
>
> You can get all clusters (ie unthresholded for size) just by setting
> the p-threshold to 1 (-p option). You will still need to set a
> cluster-forming threshold (--thresh option).
>
> Hope this answer the questions?
> Cheers.
>
>
>
> On 28 Jun 2007, at 05:34, Junghee Lee wrote:
>
>> Hello Everyone,
>>
>> I was wondering if there is any way to get indexes of activated areas
>> (based on the size) using uncorrected threshold to select ROI, like
>> the outputs of the cluster-based thresholding.
>>
>> I have about 40 subjects and would like to know whether there is any
>> way to get indexes of activated blobs based on its size. The problem
>> is that I would like to use uncorrected thresholding instead of the
>> cluster-based thresholding. if not, I'd probably use fslview to
>> check each activated voxels. It would be nice to have another way to
>> verify manual selection.
>>
>> Thanks,
>> Junghee
>>
>>
>> ------------------------------------
>> Junghee Lee
>> Post-doctoral fellow
>> Semel Institute of Neuroscience and Human Behavior, UCLA
>>
>> UCLA/VA Greater Los Angeles Healthcare System
>> 11301 Wilshire Blvd.
>> MIRECC, Bldg. 210 (MC 210A)
>> Los Angeles, CA 90073
>>
>> 310-478-3711 ext.42986
>> http://greenlab.npih.ucla.edu
>
>
> -----------------------------------------------------------------------
> ----
> Stephen M. Smith, Professor of Biomedical Engineering
> Associate Director, Oxford University FMRIB Centre
>
> FMRIB, JR Hospital, Headington, Oxford OX3 9DU, UK
> +44 (0) 1865 222726 (fax 222717)
> [log in to unmask] http://www.fmrib.ox.ac.uk/~steve
> -----------------------------------------------------------------------
> ----
>
>
------------------------------------
Junghee Lee
Post-doctoral fellow
Semel Institute of Neuroscience and Human Behavior, UCLA
UCLA/VA Greater Los Angeles Healthcare System
11301 Wilshire Blvd.
MIRECC, Bldg. 210 (MC 210A)
Los Angeles, CA 90073
310-478-3711 ext.42986
http://greenlab.npih.ucla.edu
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