Hi Saad,
Thanks for your email.
I was definitely only going to be using the fdt gui because my linux
skills are horrible. I attached the log file of the error message I get
from the probtrack/fdt gui...any ideas?
Thanks,
emily
Saad Jbabdi wrote:
> Hi,
> you can draw your seed masks using fslview.
> same for target masks, although these should be listed in a text file
> that you provide as an input for probtrack (if you're not using the
> fdt gui)
>
> saad
>
>
> On 19 Jul 2007, at 20:33, Emily Rubin Ferreira wrote:
>
>> Hi,
>>
>> I have run bedpost on my data, and have been able to perform single-voxel
>> simple tractography.
>>
>> What steps do I need to take to create a binary seed mask of many
>> voxels to
>> run tractography in seed mask mode (in diffusion space for example)?
>>
>> Also are the same steps taken for creating target masks for connectivity
>> based seed classification?
>>
>> Thanks,
>> emily
>
>
> ---------------------------------------------------------------------------
> Saad Jbabdi,
> Postdoctoral Research Assistant,
> Oxford University FMRIB Centre
>
> FMRIB, JR Hospital, Headington, Oxford OX3 9DU, UK
> +44 (0) 1865 222545 (fax 222717)
> [log in to unmask] <mailto:[log in to unmask]>
> http://www.fmrib.ox.ac.uk/~saad <http://www.fmrib.ox.ac.uk/%7Esaad>
> ---------------------------------------------------------------------------
>
>
>
>
Tix Error: couldn't execute "C:\cygwin\usr\local\fsl\bin\remove_ext": no such file or directory
couldn't execute "C:\cygwin\usr\local\fsl\bin\remove_ext": no such file or directory
while executing
"exec $FSLDIR/bin/remove_ext $probtrack(seed) "
(procedure "probtrack_update_files" line 6)
invoked from within
"probtrack_update_files .fdt /home/emily/fsl_data/subj1/Scan3.bedpost/Trial1_Area10-mask.nii.gz"
("uplevel" body line 1)
invoked from within
"uplevel #0 $cmd $args"
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