Hi - your installation of FSL isn't working at all - see the detailed
Suse FSL installation instructions on Michael Hanke's webpage for
more on how to complete the installation.
Cheers, Steve.
On 16 Jul 2007, at 11:00, Gabriel Ziegler wrote:
> Hi,
>
> I just installed fsl (64bit) on a linux Suse machine and tried to
> evaluate
> it with FEEDS. I usually work on windows systems so i don't really
> know
> much about this system. I've got many errors and FEEDS doesn't finish
> because of missing or corrupt files ?! The top command shows the
> following
> memory state (if this is helpful):
>
> top - 10:54:55 up 10 days, 1:54, 4 users, load average: 0.06, 0.28,
> 0.25
> Tasks: 127 total, 2 running, 125 sleeping, 0 stopped, 0 zombie
> Cpu(s): 0.3% us, 0.7% sy, 0.0% ni, 99.0% id, 0.0% wa, 0.0%
> hi, 0.0%
> si
> Mem: 2055404k total, 1946580k used, 108824k free, 26984k
> buffers
> Swap: 6835616k total, 3500k used, 6832116k free, 1363904k
> cached
>
> The exact output of FEEDS follows below. Any Ideas how to correct
> this
> problem(s)? For our fmri analysis the melodic tool would be most
> important.
>
> Thanks in advance for your help.
> Gabriel Ziegler
>
> FSL Evaluation and Example Data Suite v3.3
>
> start time = Mo Jul 16 10:51:27 CEST 2007
> hostname = amd05
> os = Linux amd05 2.6.13-15.15-default #1 Mon Feb 26 14:11:33 UTC 2007
> x86_64 x86_64 x86_64 GNU/Linux
>
> /bin/rm -rf /home/ziegler/feeds/feeds/results ;
> mkdir /home/ziegler/feeds/feeds/results
>
>
> Starting PRELUDE & FUGUE at Mo Jul 16 10:51:27 CEST 2007
> No output image created
> Warning - test failed!
> No output image created
> Warning - test failed!
>
> Starting SUSAN at Mo Jul 16 10:51:28 CEST 2007
> % error = 0.0
>
> Starting SIENAX (including testing BET and FLIRT and FAST) at Mo
> Jul 16
> 10:52:20 CEST 2007
> checking error on BET:
> % error = 0.0
> checking error on FLIRT:
> No output image created
> Warning - test failed!
> checking error on FAST:
> checking error on single-image binary segmentation:
> No output image created
> Warning - test failed!
> checking error on partial volume images:
> No output image created
> Warning - test failed!
> No output image created
> Warning - test failed!
> No output image created
> Warning - test failed!
> checking error on SIENAX volume outputs:
> % error = 46.36
> Warning - test failed!
> % error = 2.35
> Warning - test failed!
> % error = 58.57
> Warning - test failed!
> % error = 40.66
> Warning - test failed!
> % error = 99.23
> Warning - test failed!
>
> Starting BET2 at Mo Jul 16 10:52:33 CEST 2007
> checking error on T1 brain extraction:
> No output image created
> Warning - test failed!
> checking error on skull and scalp surfaces:
> No output image created
> Warning - test failed!
> No output image created
> Warning - test failed!
> No output image created
> Warning - test failed!
>
> Starting FEAT at Mo Jul 16 10:52:34 CEST 2007
> checking error on filtered functional data:
> No output image created
> Warning - test failed!
> checking error on raw Z stat images:
> No output image created
> Warning - test failed!
> No output image created
> Warning - test failed!
> No output image created
> Warning - test failed!
> checking error on thresholded Z stat images:
> No output image created
> Warning - test failed!
> No output image created
> Warning - test failed!
> No output image created
> Warning - test failed!
> checking error on position of largest cluster of Talairached zfstat1:
> couldn't open
> "/home/ziegler/feeds/feeds/results/fmri.feat/
> cluster_zfstat1_std.txt": no
> such file or directory
> while executing
> "open ${FEEDSDIR}/results/fmri.feat/cluster_zfstat1_std.txt r "
> invoked from within
> "if { $feeds(feat) } {
>
> puts "\nStarting FEAT at [ exec date ]"
>
> # fix FEAT setup file to use FEEDSDIR and FSLDIR
> fsl:exec "cp ${FEEDSDIR}/data/fmri.fe..."
> (file "./RUN" line 285)
>
------------------------------------------------------------------------
---
Stephen M. Smith, Professor of Biomedical Engineering
Associate Director, Oxford University FMRIB Centre
FMRIB, JR Hospital, Headington, Oxford OX3 9DU, UK
+44 (0) 1865 222726 (fax 222717)
[log in to unmask] http://www.fmrib.ox.ac.uk/~steve
------------------------------------------------------------------------
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