For me it works with homologous but very different structures with no
problem.
Just run the script provided for non-identical PDBs, and not
theseus3d direct.
You need to also install muscle for that, which is also easy.
Tassos
On 21 Jul 2007, at 17:57, Donnie Berkholz wrote:
> Anastassis Perrakis wrote:
>> I really like THESEUS these days
>>
>> http://www.theseus3d.org/
>>
>> Really neat work, easy to install and to use and kind of unique in
>> the
>> ML idea.
>
> I would be a lot more likely to use it if it was a bit more
> flexible in
> its input. I tried it once and it seemed to require identical lists of
> atoms, even as far as requiring multiple conformations and the same
> waters in both PDBs.
>
> Thanks,
> Donnie
>
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