Hello Miguel,
Thank you for your reply.
It's related to the total SASA of a protein structure but not that of
per residue. However, it still give me a hint. :)
Best,
Hyunchul Kim
On Tue, 2007-07-24 at 08:12 +0200, Miguel Ortiz-Lombardía wrote:
> Hello Hyunchul Kim,
>
> I found this paper very interesting:
>
> Novotny M, Seibert M, Kleywegt GJ.
> On the precision of calculated solvent-accessible surface areas.
> Acta Crystallogr D Biol Crystallogr. 2007 Feb;63(Pt 2):270-4. Epub
> 2007 Jan 16.
> PMID: 17242521 [PubMed - indexed for MEDLINE]
>
> http://www.ncbi.nlm.nih.gov/sites/entrez?Db=PubMed&Cmd=ShowDetailView&TermToSearch=17242521&ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum
>
> It discusses most of the topics you mentioned.
> There are many programs around to do that type of calculations. I tend
> to use naccess.
>
> Best,
>
>
>
> Miguel
>
>
> 2007/7/24, Hyunchul Kim <[log in to unmask]>:
> I am interested in the SASA per residue.
>
> On Tue, 2007-07-24 at 14:43 +0900, Hyunchul Kim wrote:
> > Hi all,
> >
> > Resolution doesn't matter when solvent accessible surface
> area(SASA) is
> > calculated?
> >
> > If resolution is poor, I think that the SASA is not likely
> to be
> > reliable. Then, is there any resolution cut-off for SASA
> calculation?
> >
> > Also, when you calculate SASA, do you include NMR data, too?
> >
> > Any comments are welcome :)
> >
> > Thank you in advance.
> >
> > Best,
> > Hyunchul Kim
> >
>
>
>
> --
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> ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
> Je suis de la mauvaise herbe,
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>
> Georges Brassens
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